Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 9.2e-78 293.5 150 100.0
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 4.4e-48 194.9 150 71.3
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 9.9e-48 193.7 153 69.3
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 7.1e-46 187.6 153 68.0
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.1e-42 176.0 150 63.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 4.5e-40 168.3 145 64.1
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.9e-36 155.2 146 56.8
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.5e-35 152.5 150 57.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 3.3e-35 152.1 153 54.9
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 5.6e-35 151.4 150 57.3
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.8e-34 149.1 152 56.6
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 4.8e-34 148.3 153 56.2
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.4e-33 146.7 154 55.2
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 2.6e-32 142.5 155 51.0
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.3e-31 140.2 143 55.9
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 2.2e-31 139.4 158 51.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.9e-31 139.0 144 53.5
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 4.2e-30 135.2 142 54.2
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.7e-29 132.5 162 48.8
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.0e-29 131.3 145 52.4
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 3.9e-28 128.6 115 62.6
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.9e-28 128.6 154 47.4
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.1e-27 127.1 158 48.7
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.3e-27 125.2 154 47.4
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 7.4e-27 124.4 156 45.5
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.6e-26 123.2 155 47.7
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 3.7e-26 122.1 151 49.0
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.8e-26 121.7 146 49.3
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.4e-25 120.2 156 46.2
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.4e-25 120.2 156 46.2
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-25 119.8 157 45.9
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.8e-25 119.8 150 44.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.4e-25 119.4 150 46.7
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.4e-25 119.4 150 44.7
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 4.0e-25 118.6 157 47.1
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.0e-25 118.6 149 46.3
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.0e-25 118.6 143 51.0
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.9e-25 117.9 150 46.0
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 2.0e-24 116.3 162 43.8
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 2.0e-24 116.3 153 46.4
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 3.4e-24 115.5 147 48.3
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 4.5e-24 115.2 158 45.6
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.6e-24 114.4 150 44.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.4e-22 110.2 154 42.9
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.9e-22 109.8 154 42.2
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 3.2e-22 109.0 147 44.9
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 4.2e-22 108.6 146 46.6
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 9.3e-22 107.5 160 44.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 9.3e-22 107.5 150 44.0
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.6e-21 106.7 149 42.3
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.1e-21 106.3 141 47.5
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.5e-21 105.5 140 45.0
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 4.6e-21 105.1 153 47.1
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 4.6e-21 105.1 153 43.1
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 6.0e-21 104.8 147 41.5
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.0e-20 104.0 148 44.6
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.3e-20 103.6 158 42.4
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.3e-20 102.8 154 42.2
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.3e-20 102.8 148 43.2
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 3.0e-20 102.4 153 40.5
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.0e-20 102.4 154 40.9
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.0e-20 102.4 148 43.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.9e-20 102.1 163 41.7
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 3.9e-20 102.1 148 43.2
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 5.1e-20 101.7 154 40.9
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.7e-20 101.3 136 42.6
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 8.7e-20 100.9 156 40.4
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 8.7e-20 100.9 149 40.3
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 8.7e-20 100.9 149 40.3
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.1e-19 100.5 139 45.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.5e-19 100.1 157 40.8
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.5e-19 100.1 150 39.3
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 3.3e-19 99.0 152 38.2
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.3e-19 99.0 151 42.4
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 5.7e-19 98.2 150 42.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 7.4e-19 97.8 157 40.8
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 9.7e-19 97.4 154 42.2
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.8e-18 95.9 126 44.4
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.1e-17 94.0 149 40.9
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 1.1e-17 94.0 141 39.0
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.1e-17 92.0 160 39.4
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 4.1e-17 92.0 136 39.7
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.1e-17 92.0 149 38.9
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 5.3e-17 91.7 140 40.7
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 9.0e-17 90.9 147 40.1
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 9.0e-17 90.9 147 40.1
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.2e-16 90.5 134 41.0
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.5e-16 90.1 150 41.3
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.6e-16 89.4 147 40.1
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.6e-16 89.4 146 41.8
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.6e-16 89.4 147 41.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 4.5e-16 88.6 136 38.2
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 4.5e-16 88.6 139 38.1
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 4.5e-16 88.6 139 38.1
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 4.5e-16 88.6 139 38.1
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 4.5e-16 88.6 144 44.4
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 5.9e-16 88.2 153 43.8
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 5.9e-16 88.2 136 39.7
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 7.6e-16 87.8 146 36.3
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.3e-15 87.0 139 37.4
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.3e-15 87.0 121 39.7
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.3e-15 87.0 163 35.0
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.7e-15 86.7 142 42.3
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.2e-15 86.3 158 36.7
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 6.5e-15 84.7 123 39.8
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 8.5e-15 84.3 137 38.0
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.4e-14 83.6 138 41.3
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.9e-14 83.2 136 36.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 7.2e-14 81.3 141 42.6
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.2e-13 80.5 147 36.7
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.6e-13 80.1 159 37.7
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 3.6e-13 79.0 137 38.0
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 6.1e-13 78.2 138 42.0
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 6.1e-13 78.2 160 33.8
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 7.9e-13 77.8 137 37.2
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 7.9e-13 77.8 160 34.4
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.8e-12 76.6 112 46.4
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.8e-12 76.6 112 46.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.8e-12 76.6 146 39.7
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.3e-12 76.3 154 34.4
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.3e-12 76.3 138 34.1
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.9e-12 75.5 161 36.0
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 3.9e-12 75.5 77 51.9
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.1e-12 75.1 135 36.3
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 6.7e-12 74.7 137 35.0
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 6.7e-12 74.7 148 36.5
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.5e-11 72.8 160 38.1
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 4.3e-11 72.0 149 32.9
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 5.7e-11 71.6 156 37.8
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 5.7e-11 71.6 142 35.9
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.7e-11 71.6 139 35.3
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 5.7e-11 71.6 159 34.0
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.4e-11 71.2 160 36.2
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.3e-10 70.5 144 36.1
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 2.2e-10 69.7 122 38.5
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.8e-10 69.3 149 37.6
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.7e-10 68.9 122 37.7
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.8e-10 68.6 108 38.0
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.8e-10 68.6 155 32.9
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 4.8e-10 68.6 106 43.4
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.8e-09 66.6 71 54.9
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.4e-09 66.2 147 31.3
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.4e-09 66.2 83 48.2
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-09 65.9 144 32.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.3e-09 65.1 136 34.6
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-09 65.1 143 32.2
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 6.9e-09 64.7 108 36.1
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 6.9e-09 64.7 108 38.9
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.5e-08 63.5 127 35.4
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-08 62.8 138 29.7
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.4e-08 62.4 154 29.9
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.4e-08 62.4 150 33.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.9e-08 61.6 144 34.7
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 5.9e-08 61.6 98 38.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.0e-07 60.8 141 33.3
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-07 60.8 146 30.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.3e-07 60.5 140 32.1
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.2e-07 59.7 148 31.1
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 6.5e-07 58.2 161 32.9
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 8.5e-07 57.8 135 34.1
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.5e-07 57.8 145 28.3
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.2e-06 55.8 58 48.3


User provided reference genes

Program Settings