Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.0e-72 275.0 132 100.0
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 9.7e-31 137.1 136 55.1
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 4.8e-30 134.8 135 54.8
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.7e-28 127.5 146 49.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 6.5e-27 124.4 136 50.7
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 4.2e-26 121.7 136 50.7
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 4.4e-23 111.7 132 47.0
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.8e-22 108.2 136 47.8
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.4e-21 106.7 135 46.7
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.1e-21 105.1 136 41.9
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 2.0e-20 102.8 137 40.1
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.0e-19 100.5 135 43.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.9e-19 99.0 142 44.4
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.9e-19 99.0 132 45.5
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.9e-19 99.0 136 41.2
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 2.9e-19 99.0 146 41.1
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 8.5e-19 97.4 137 38.0
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.5e-18 95.9 135 38.5
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.2e-18 95.1 141 41.1
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 5.5e-18 94.7 134 44.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.5e-18 94.7 140 42.1
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.2e-18 94.4 134 39.6
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.2e-17 93.6 139 40.3
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.6e-17 93.2 137 42.3
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.6e-17 93.2 134 39.6
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 4.7e-17 91.7 142 40.8
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 4.7e-17 91.7 141 41.1
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.4e-16 90.1 142 38.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.3e-16 89.4 140 39.3
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.9e-16 88.6 140 37.9
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 6.7e-16 87.8 143 37.8
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 8.8e-16 87.4 134 38.1
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.5e-15 86.7 142 40.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 2.0e-15 86.3 142 38.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.6e-15 85.9 137 37.2
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.4e-15 85.1 131 42.7
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.4e-15 85.1 129 41.1
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.7e-15 84.7 139 39.6
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.7e-15 84.0 139 38.8
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 9.7e-15 84.0 139 38.8
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.7e-14 83.2 131 38.2
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.7e-14 82.0 137 38.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.7e-14 82.0 132 33.3
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 4.8e-14 81.6 139 36.7
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 6.3e-14 81.3 140 35.7
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 8.2e-14 80.9 123 38.2
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 8.2e-14 80.9 132 37.1
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 8.2e-14 80.9 145 34.5
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.1e-13 80.5 128 34.4
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.4e-13 80.1 132 32.6
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 2.4e-13 79.3 85 50.6
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.4e-13 79.3 122 40.2
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 2.4e-13 79.3 132 36.4
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.1e-13 79.0 126 34.1
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.3e-13 78.2 144 33.3
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.3e-13 78.2 144 33.3
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 7.0e-13 77.8 126 40.5
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 7.0e-13 77.8 143 37.8
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.6e-12 76.6 138 31.9
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.6e-12 76.6 145 35.2
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 2.6e-12 75.9 128 37.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 2.6e-12 75.9 129 37.2
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.5e-12 75.5 153 33.3
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 3.5e-12 75.5 143 34.3
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.5e-12 75.5 126 35.7
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.5e-12 75.5 129 37.2
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 5.9e-12 74.7 128 36.7
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 7.7e-12 74.3 133 37.6
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 7.7e-12 74.3 131 34.4
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.0e-11 73.9 127 38.6
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.3e-11 73.6 146 34.2
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.7e-11 73.2 137 32.8
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.2e-11 72.8 140 40.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.2e-11 72.8 138 35.5
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.9e-11 72.4 148 33.8
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 2.9e-11 72.4 126 38.9
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.8e-11 72.0 130 37.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.0e-11 71.6 131 35.9
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 6.5e-11 71.2 131 37.4
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 8.5e-11 70.9 136 35.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.9e-10 69.7 149 36.2
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.9e-10 69.7 149 37.6
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.9e-10 69.7 132 35.6
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 3.2e-10 68.9 130 34.6
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.2e-10 68.6 132 35.6
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.2e-10 68.6 132 35.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.5e-10 68.2 122 36.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 9.4e-10 67.4 121 34.7
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.1e-09 66.2 137 35.0
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.1e-09 66.2 137 35.0
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.1e-09 66.2 60 53.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.1e-09 66.2 139 31.7
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.7e-09 65.9 147 32.7
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 3.6e-09 65.5 126 34.9
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 6.1e-09 64.7 121 36.4
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 8.0e-09 64.3 140 34.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 8.0e-09 64.3 133 34.6
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 8.0e-09 64.3 137 31.4
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 8.0e-09 64.3 150 36.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 8.0e-09 64.3 142 31.7
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.0e-08 63.9 128 32.0
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-08 63.9 125 32.0
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 1.0e-08 63.9 122 38.5
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.8e-08 63.2 121 36.4
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.8e-08 63.2 121 36.4
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.8e-08 63.2 121 36.4
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.3e-08 62.8 121 36.4
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.3e-08 62.8 147 34.7
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-08 62.8 126 32.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 2.3e-08 62.8 121 37.2
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 4.0e-08 62.0 121 36.4
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 4.0e-08 62.0 121 36.4
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.0e-08 62.0 131 31.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.2e-08 61.6 129 34.1
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.2e-08 61.6 148 30.4
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 8.8e-08 60.8 144 31.9
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 8.8e-08 60.8 146 30.1
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.5e-07 60.1 135 31.9
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.0e-07 59.7 127 30.7
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.3e-07 58.9 150 28.7
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 4.4e-07 58.5 121 30.6
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 4.4e-07 58.5 132 33.3
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.4e-07 58.5 149 31.5
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 5.7e-07 58.2 121 34.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 5.7e-07 58.2 134 32.8
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 7.5e-07 57.8 145 33.1
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 9.7e-07 57.4 121 29.8
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-06 57.0 68 47.1
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 3.7e-06 55.5 115 32.2
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 3.7e-06 55.5 39 64.1
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.3e-06 54.7 138 29.7
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 6.3e-06 54.7 140 30.7
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 8.2e-06 54.3 129 27.9
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 8.2e-06 54.3 126 31.0


User provided reference genes

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