Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1357.4 650 100.0
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1325.5 647 97.4
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1308.9 650 95.2
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1260.0 650 90.6
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1233.0 650 89.5
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1215.3 650 88.2
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1214.5 648 88.0
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1212.6 648 88.0
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1197.6 641 88.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1194.9 594 95.1
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1187.6 669 83.9
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1149.4 646 82.4
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1148.7 696 77.3
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1147.5 650 80.6
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1144.0 651 80.8
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1142.5 653 80.4
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1141.3 651 80.5
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1135.9 641 80.8
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1135.6 648 79.5
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1135.6 638 81.7
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 647 79.9
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1125.2 646 81.1
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1124.4 648 79.2
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1124.4 646 80.3
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1122.8 649 79.4
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1122.5 651 79.3
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1120.9 648 79.6
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 652 79.0
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1118.2 649 79.0
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1117.8 649 78.9
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1117.1 639 80.0
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1116.3 652 78.8
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1110.9 647 77.9
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1110.5 651 76.8
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 640 79.7
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 652 78.8
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1105.9 647 78.7
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1099.3 641 79.4
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 651 76.7
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 725 71.3
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 664 76.1
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1096.6 649 77.0
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 650 76.2
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1094.3 655 77.1
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 651 75.9
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1092.0 651 76.5
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1089.3 642 77.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 650 75.5
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1085.9 634 80.3
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 640 79.2
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 643 76.8
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 805 66.0
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1084.3 647 76.5
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 646 78.5
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 648 76.9
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 682 72.9
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 651 76.0
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 647 75.4
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1077.0 648 76.2
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 0.0e+00 1075.8 643 76.5
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.5e-310 1068.9 610 79.8
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 7.5e-310 1066.6 651 76.3
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 9.8e-310 1066.2 646 74.8
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 9.8e-310 1066.2 667 73.6
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 3.5e-307 1057.7 614 78.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.3e-306 1055.8 597 80.9
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 2.3e-306 1055.0 642 74.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 6.6e-306 1053.5 650 74.2
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 6.6e-306 1053.5 642 74.1
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 2.5e-305 1051.6 642 73.8
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.3e-305 1051.2 650 74.5
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 7.3e-305 1050.0 647 74.5
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 645 73.5
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 4.7e-304 1047.3 645 73.2
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 1.0e-303 1046.2 635 74.6
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 6.8e-303 1043.5 646 73.7
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 1.2e-302 1042.7 646 74.6
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.2e-302 1042.7 642 74.3
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 645 73.2
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 645 73.2
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 645 73.2
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 647 72.8
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 5.6e-297 1023.8 794 62.7
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 2.6e-294 1015.0 588 80.4
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 5.4e-292 1007.3 646 70.4
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.3e-289 997.7 647 71.3
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.7e-283 978.4 648 71.6
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 1.4e-279 966.1 648 67.4
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 7.8e-275 950.3 558 76.3
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 5.1e-274 947.6 643 71.1
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 2.4e-260 902.1 594 68.7
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 2.1e-256 889.0 556 73.2
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 4.5e-254 881.3 575 69.9
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.8e-248 862.1 641 61.6
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 5.5e-244 847.8 648 60.6
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 5.9e-238 827.8 646 59.8
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 2.2e-208 729.6 514 67.9
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 5.4e-191 671.8 363 79.9
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 6.4e-176 621.7 371 78.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.1e-164 584.3 378 73.0
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.4e-162 577.4 557 53.7
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 4.9e-160 568.9 373 70.2
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.4e-138 497.7 533 48.0
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.0e-121 440.7 241 80.5
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 4.0e-85 320.1 742 31.3
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 4.0e-77 293.5 152 83.6
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 2.9e-72 277.3 245 57.6
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 4.4e-60 236.9 200 60.5
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.5e-28 130.6 72 83.3
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 7.6e-28 129.8 73 80.8
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 2.3e-24 118.2 77 66.2
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.5e-23 114.8 70 70.0
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.8e-22 110.5 71 64.8
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 8.1e-22 109.8 92 60.9
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.0e-21 107.5 70 65.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 8.4e-19 99.8 64 68.8
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 4.6e-17 94.0 66 69.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 4.6e-17 94.0 66 69.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 4.6e-17 94.0 66 69.7
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.5e-15 89.0 83 57.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.6e-14 85.5 82 48.8
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.1e-13 80.9 52 65.4
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.0e-12 78.6 99 47.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 3.5e-09 67.8 69 47.8
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 8.7e-08 63.2 64 46.9


User provided reference genes

Program Settings