Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1687.2 858 100.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1584.3 858 93.6
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1575.1 857 93.9
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1563.5 857 93.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1484.9 859 87.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1479.2 856 86.9
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1477.6 836 90.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1477.6 859 88.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1477.2 858 87.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1470.3 850 88.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1453.3 855 87.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1444.1 851 87.0
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1438.7 859 85.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1434.5 827 87.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1427.5 860 86.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1427.2 890 78.8
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 846 84.3
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1400.6 858 82.9
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 853 83.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 858 81.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 862 82.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1390.9 861 82.7
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1389.0 862 82.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 856 82.0
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1385.5 859 82.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 860 82.1
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 855 81.6
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 854 82.4
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 862 82.3
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 862 82.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 849 81.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 863 81.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 862 81.9
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 838 83.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 854 81.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 854 81.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1370.1 852 81.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1370.1 854 81.4
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 862 81.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 860 81.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1367.4 863 80.5
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 863 81.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 860 81.2
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1362.1 820 84.0
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1361.7 860 80.8
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1361.3 853 81.0
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 906 77.7
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1354.3 893 78.7
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 844 81.2
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 853 80.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 873 78.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 851 81.3
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 845 80.4
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 854 79.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 854 79.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 770 88.8
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 854 80.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 846 79.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 844 80.6
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 842 81.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1328.5 853 79.4
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 852 79.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 843 79.7
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 857 80.0
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 829 80.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1311.2 810 82.0
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1311.2 860 79.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 842 79.3
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 839 79.9
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 803 82.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 877 76.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 833 80.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 836 78.9
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 843 80.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 837 83.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 848 79.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 831 80.4
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 847 78.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 830 79.9
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 840 80.4
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 842 79.0
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 850 79.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 842 78.6
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 854 78.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 846 78.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 846 78.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 846 78.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 846 78.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 847 79.1
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 847 79.1
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 718 89.8
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 839 79.9
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 858 78.8
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 816 80.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 893 73.1
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 843 78.1
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 834 78.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 830 80.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 818 80.7
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 840 77.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 816 80.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 837 79.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 826 80.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 815 79.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 841 78.2
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 837 79.3
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 841 78.2
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 829 79.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 820 78.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 839 77.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 816 79.2
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 856 75.8
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 826 77.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 825 77.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 818 78.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 825 77.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 836 78.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 889 74.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 776 83.2
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 825 77.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 818 79.2
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 870 75.6
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 823 79.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 809 76.9
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1242.3 831 72.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 826 76.8
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 814 77.3
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 831 77.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 820 75.9
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 772 78.0
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 876 72.7
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1203.3 839 76.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 835 75.2
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1178.3 840 72.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 758 79.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1162.1 898 69.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1153.7 824 72.0
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1152.5 811 72.0
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 814 72.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 736 80.6
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 826 70.5
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.5e-302 1042.7 827 68.7
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 7.1e-284 980.7 597 79.6
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 5.3e-271 937.9 638 71.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.6e-262 909.1 553 84.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-261 906.4 840 61.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 5.2e-258 894.8 517 83.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 7.0e-255 884.4 588 73.6
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-174 615.9 709 52.8
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.4e-148 528.9 435 61.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.9e-142 508.8 321 77.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.4e-140 503.1 360 78.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.6e-110 404.8 318 74.8
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-100 370.9 397 54.2
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.0e-96 359.0 263 67.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.8e-85 321.6 582 44.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.3e-72 278.9 153 85.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.6e-60 236.5 156 76.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.3e-43 182.6 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.9e-35 154.8 501 28.3
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.1e-32 144.1 459 28.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.3e-31 141.4 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.2e-30 138.7 471 27.0
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 7.7e-28 130.2 74 82.4
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.3e-27 129.4 68 91.2
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-26 125.2 471 28.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-24 119.4 96 65.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.3e-24 118.6 430 28.6
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.4e-23 113.6 123 50.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-17 94.4 266 28.2
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.0e-15 89.0 87 55.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-15 89.0 220 31.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.7e-14 84.7 137 41.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-08 63.5 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

Program Settings