Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 8.6e-216 753.4 398 100.0
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.1e-205 719.9 397 95.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 7.8e-201 703.7 399 92.5
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.2e-190 669.8 399 85.7
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 9.9e-188 660.2 399 86.2
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 8.7e-184 647.1 399 84.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.6e-182 641.7 401 82.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.6e-182 641.7 401 82.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 6.2e-182 641.0 400 85.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 8.1e-182 640.6 400 84.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 7.6e-180 634.0 388 83.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.8e-173 612.8 399 80.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 6.9e-173 610.9 400 78.2
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.5e-172 608.2 399 78.7
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 3.8e-171 605.1 399 78.2
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 8.4e-171 604.0 399 77.4
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 9.3e-170 600.5 402 76.9
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 4.6e-169 598.2 399 76.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 6.0e-169 597.8 400 77.2
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.0e-168 595.5 401 76.8
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 3.9e-168 595.1 400 75.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.9e-168 595.1 399 75.9
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.9e-168 595.1 404 76.0
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-167 593.6 404 77.0
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-167 593.6 399 75.7
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.5e-167 593.2 414 74.2
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.9e-167 592.8 404 76.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-167 592.8 403 77.2
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.3e-167 592.0 399 75.4
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.3e-167 592.0 399 75.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.3e-167 592.0 400 78.8
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.6e-167 591.3 402 77.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 7.4e-167 590.9 401 77.6
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.6e-167 590.5 400 76.8
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 9.6e-167 590.5 400 75.8
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.3e-166 590.1 401 76.8
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.7e-166 588.6 399 76.4
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 6.2e-166 587.8 401 76.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.2e-166 587.4 404 77.0
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 8.2e-166 587.4 402 75.1
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.8e-165 586.3 402 76.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.8e-165 586.3 400 76.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.8e-165 586.3 399 75.2
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 6.9e-165 584.3 400 75.2
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 9.0e-165 583.9 399 74.9
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.2e-164 583.6 404 75.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.6e-164 582.4 400 75.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 4.5e-164 581.6 400 76.0
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 5.8e-164 581.3 402 75.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 5.8e-164 581.3 402 75.6
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 5.8e-164 581.3 401 75.6
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.8e-164 581.3 400 75.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.0e-163 580.5 403 75.4
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.2e-163 579.3 401 74.3
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.9e-163 578.9 399 74.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.9e-163 578.2 404 74.8
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.4e-163 577.4 401 75.8
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 8.4e-163 577.4 402 74.9
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.9e-162 576.2 404 74.5
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.5e-162 575.9 401 74.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 4.2e-162 575.1 399 75.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 7.1e-162 574.3 401 72.6
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.3e-160 570.1 437 69.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.8e-160 569.7 399 72.9
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.3e-160 569.3 402 76.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.1e-160 568.2 398 72.4
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 6.7e-160 567.8 399 74.2
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.7e-160 567.4 400 73.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.5e-159 566.6 400 74.2
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 5.7e-159 564.7 402 74.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 9.7e-159 563.9 401 72.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.6e-158 563.1 400 75.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.2e-158 562.8 399 72.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 6.3e-158 561.2 398 73.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.1e-157 560.5 448 68.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.8e-157 559.7 400 73.5
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.4e-157 559.3 401 74.1
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.4e-157 559.3 401 73.8
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 5.3e-157 558.1 401 73.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.0e-157 557.4 406 73.4
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.0e-156 556.2 401 73.6
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.6e-156 555.8 401 73.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.6e-156 555.8 405 73.1
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.9e-156 554.7 445 65.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.0e-155 553.9 401 72.8
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.7e-155 553.1 399 72.4
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.2e-155 552.7 401 72.8
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.8e-155 552.0 405 71.9
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.2e-154 548.9 406 71.2
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.2e-154 548.9 438 68.9
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.2e-154 547.7 400 71.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 7.2e-154 547.7 400 71.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-153 545.4 403 73.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-153 545.4 409 72.9
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.6e-153 545.4 396 68.2
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.0e-152 543.9 396 67.7
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.3e-152 542.7 401 72.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.9e-152 542.0 400 70.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 5.1e-152 541.6 399 69.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 8.8e-152 540.8 402 68.2
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.1e-151 540.4 401 70.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-150 537.0 398 69.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.2e-150 536.2 426 65.5
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.8e-150 535.0 400 69.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.8e-149 533.1 404 71.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 4.1e-149 531.9 399 71.4
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.5e-148 530.0 401 72.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 3.4e-148 528.9 401 70.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.8e-147 525.4 338 84.0
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 3.6e-145 518.8 333 83.5
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 6.1e-145 518.1 402 65.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.4e-144 516.9 403 70.0
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.8e-144 516.5 399 68.2
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 3.9e-144 515.4 402 69.4
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 7.4e-143 511.1 400 64.0
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 9.7e-143 510.8 411 68.4
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.8e-142 509.2 399 67.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 6.3e-142 508.1 398 64.6
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 5.0e-139 498.4 398 63.1
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 6.5e-131 471.5 360 66.9
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-126 456.8 514 53.5
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.3e-123 447.2 375 61.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-117 427.2 436 59.4
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.0e-116 423.3 295 74.2
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.8e-115 419.1 398 55.0
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.2e-113 414.1 437 56.8
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 6.1e-113 411.8 404 59.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-109 400.2 400 53.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-109 400.2 400 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.0e-100 370.2 397 50.4
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 9.2e-93 344.7 406 54.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 2.7e-92 343.2 402 47.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.7e-86 322.8 404 52.0
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.1e-80 304.7 197 79.2
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 7.1e-69 265.4 433 40.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.2e-65 252.3 353 43.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.4e-64 250.4 271 56.8
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.1e-57 225.3 294 44.6
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-50 204.5 165 67.3
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.3e-38 164.9 144 63.2
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 8.5e-30 135.6 100 68.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 3.6e-28 130.2 417 29.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.2e-25 120.9 123 56.9
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.7e-25 120.2 95 60.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.7e-22 111.3 94 62.8
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.9e-22 110.5 85 76.5
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.7e-20 104.0 69 75.4
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 4.4e-18 96.7 60 76.7
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.7e-18 95.5 182 39.0
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.2e-17 94.4 451 24.2
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 8.2e-17 92.4 68 63.2
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.4e-16 91.7 438 25.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.7e-15 85.9 378 26.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.2e-13 79.3 63 58.7
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.0e-11 73.6 55 70.9
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-10 72.0 256 28.1
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 1.7e-09 68.2 40 87.5
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-06 58.5 84 44.0
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.8e-06 57.0 28 85.7


User provided reference genes

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