Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 0.0e+00 1474.5 865 100.0
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 0.0e+00 1349.0 871 89.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 0.0e+00 1236.5 874 82.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 0.0e+00 1232.2 841 83.7
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 0.0e+00 1134.0 838 76.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 0.0e+00 1133.6 838 75.9
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 0.0e+00 1111.3 874 72.0
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 0.0e+00 1078.2 875 71.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 5.9e-312 1074.7 867 72.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 7.1e-308 1060.4 881 69.6
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 4.1e-303 1044.6 874 71.5
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.4e-281 971.5 879 67.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 6.3e-272 941.0 877 65.3
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 3.3e-260 902.1 886 62.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-259 900.2 888 62.4
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.4e-250 870.2 883 58.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 7.0e-247 857.8 843 61.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.3e-245 853.6 891 57.4
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.1e-239 833.9 879 58.9
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.1e-239 831.2 878 58.9
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 9.2e-239 830.9 879 58.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 6.0e-238 828.2 782 61.3
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-237 827.4 835 61.2
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.2e-232 809.7 882 57.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.4e-231 807.0 877 58.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 3.2e-231 805.8 835 57.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.2e-231 805.8 829 56.9
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-230 803.9 882 56.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.0e-230 801.6 884 56.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.6e-229 798.1 871 56.1
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.6e-229 797.7 839 60.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.3e-228 795.8 875 57.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 9.6e-228 794.3 839 58.4
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.7e-227 792.0 880 55.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-225 786.6 835 58.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.6e-225 784.6 764 62.0
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.2e-224 783.1 829 58.4
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.4e-224 781.6 877 56.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 4.3e-220 768.8 884 52.8
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.1e-219 766.5 800 58.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.1e-219 766.5 888 52.7
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.6e-219 765.8 833 56.5
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.6e-219 765.8 890 53.4
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.3e-218 761.9 766 60.3
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.6e-217 758.1 889 52.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.3e-216 757.3 885 53.1
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.9e-216 755.4 877 56.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.2e-215 752.7 836 53.3
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 5.4e-215 751.9 796 58.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.8e-214 748.0 879 53.0
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 5.6e-212 741.9 786 57.9
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.6e-212 741.1 878 55.2
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.6e-211 740.3 880 52.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 3.6e-211 739.2 887 52.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 4.8e-211 738.8 880 53.8
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.4e-210 736.5 888 55.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-209 732.6 878 55.4
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.5e-209 732.3 836 54.4
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.3e-205 720.7 883 50.4
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.3e-205 719.9 874 52.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.1e-205 718.8 879 54.5
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.1e-204 717.6 828 52.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 3.7e-203 712.6 876 55.4
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.6e-198 695.7 760 57.6
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.5e-193 680.6 879 50.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.0e-192 677.9 839 55.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.0e-192 677.9 904 49.6
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-192 676.4 839 55.2
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.2e-190 671.0 901 48.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 6.7e-189 665.2 785 53.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-189 665.2 839 54.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 8.2e-187 658.3 846 51.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.4e-186 656.8 844 52.4
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.4e-186 656.8 845 50.1
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.1e-182 643.7 789 51.3
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.9e-182 641.7 798 52.6
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 8.8e-181 638.3 875 49.3
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 5.7e-180 635.6 838 49.2
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.3e-178 629.0 829 49.6
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.9e-178 628.6 882 50.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 4.5e-177 625.9 838 51.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-177 625.9 832 49.6
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 4.7e-174 615.9 800 53.1
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 5.1e-173 612.5 874 47.4
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.1e-172 611.3 842 49.2
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 4.4e-172 609.4 842 46.9
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.1e-170 604.7 680 54.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 6.5e-168 595.5 822 46.8
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.5e-167 594.3 832 49.2
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.6e-164 583.6 847 47.7
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.8e-163 580.1 847 46.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.5e-161 572.8 791 50.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 5.9e-161 572.4 846 48.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.9e-160 570.1 661 53.9
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 6.5e-160 568.9 782 48.7
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.0e-157 561.6 702 51.9
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.0e-157 561.6 715 51.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 6.8e-157 558.9 714 48.2
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.4e-156 556.6 862 46.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.3e-155 554.7 830 48.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.2e-155 553.9 783 46.4
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-154 550.1 829 45.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 4.1e-154 549.7 753 47.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.0e-153 547.4 738 48.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.5e-151 540.4 865 44.5
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.7e-147 527.7 758 46.0
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 2.8e-147 526.9 760 48.0
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.1e-146 525.0 624 52.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 7.0e-138 495.7 755 44.0
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.6e-137 494.6 757 44.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.5e-137 493.4 722 46.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 6.6e-136 489.2 825 43.3
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 3.1e-133 480.3 768 47.3
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 4.0e-133 479.9 705 48.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 4.4e-132 476.5 845 40.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 4.9e-131 473.0 707 48.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.1e-130 471.9 748 48.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.4e-130 470.7 744 46.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 3.0e-128 463.8 832 40.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.9e-128 463.4 703 49.2
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.1e-125 455.3 838 42.2
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 3.2e-122 443.7 719 47.3
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.3e-120 437.6 836 39.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.3e-117 427.6 702 46.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.1e-117 427.2 845 39.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.0e-109 400.2 691 44.7
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 9.9e-108 395.6 718 44.6
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.9e-107 394.0 796 38.1
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 8.4e-107 392.5 692 43.1
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 7.1e-106 389.4 680 43.1
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 9.3e-106 389.0 504 50.6
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-102 378.6 692 42.3
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-101 375.6 680 42.4
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 9.9e-100 369.0 657 43.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-95 354.4 318 62.6
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-95 354.4 318 62.6
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 3.3e-95 354.0 424 52.8
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 6.0e-89 333.2 421 48.2
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 7.4e-79 299.7 375 51.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 8.7e-72 276.2 987 31.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 7.4e-71 273.1 660 36.5
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-65 255.8 899 32.6
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 4.3e-63 247.3 301 53.2
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-58 232.6 690 33.0
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.2e-54 218.4 720 33.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.3e-51 209.1 912 28.4
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.0e-44 185.3 655 28.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.2e-43 181.8 346 39.9
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 9.1e-37 159.8 135 64.4
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 4.5e-36 157.5 158 57.6
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-35 156.4 158 59.5
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.5e-34 151.8 156 52.6
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.6e-31 141.7 208 43.8
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.0e-24 119.8 167 44.9
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 9.2e-21 106.7 122 56.6
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.6e-20 105.9 108 50.0
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.5e-20 104.8 130 49.2
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 2.3e-19 102.1 189 38.6
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 6.2e-17 94.0 77 66.2
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 3.1e-16 91.7 165 40.0
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 4.0e-16 91.3 133 41.4
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 8.9e-16 90.1 98 53.1
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-15 89.7 121 42.1
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 6.0e-12 77.4 206 35.4
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 2.3e-11 75.5 101 44.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.0e-11 75.1 85 48.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 8.6e-11 73.6 402 27.4
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 4.3e-10 71.2 49 69.4
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.1e-09 68.9 198 34.8
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 4.7e-09 67.8 443 25.3
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.3e-08 65.5 193 34.2
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.2e-07 63.2 45 68.9
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 7.5e-07 60.5 63 57.1
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 2.9e-06 58.5 90 38.9
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 4.9e-06 57.8 110 40.0


User provided reference genes

Program Settings