Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 7.9e-100 367.1 182 100.0
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.5e-98 362.8 182 98.9
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 2.8e-97 358.6 182 97.8
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.8e-96 355.9 182 96.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 2.0e-95 352.4 182 95.6
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 4.5e-95 351.3 182 94.5
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 7.7e-95 350.5 182 95.1
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 93.4
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 92.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 92.3
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 92.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.9e-93 345.9 181 93.4
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.9
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 91.8
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 91.8
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 91.8
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 5.5e-93 344.4 179 94.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 91.2
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 91.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.6e-92 342.8 178 94.4
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 90.7
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 91.2
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.7e-92 341.3 177 92.7
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 90.7
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 90.1
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 6.1e-92 340.9 180 91.7
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 90.1
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.1
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 90.1
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 89.6
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 90.1
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 89.6
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.1
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 89.0
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.7
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.7
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 89.6
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 5.1e-91 337.8 181 90.1
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.1
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 5.1e-91 337.8 180 90.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 89.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 1.5e-90 336.3 179 90.5
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 87.9
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 88.5
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 88.5
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 87.9
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 86.8
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.3e-89 333.2 182 87.9
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 87.9
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 4.8e-89 331.3 182 88.5
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 87.9
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.1e-88 330.1 179 87.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.4e-88 329.7 182 86.8
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.1e-88 328.6 176 89.8
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 5.3e-88 327.8 176 90.3
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 5.3e-88 327.8 178 88.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 7.0e-88 327.4 194 84.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 7.0e-88 327.4 202 80.7
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 9.1e-88 327.0 178 88.2
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.6e-87 325.5 176 90.3
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 86.3
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 4.5e-87 324.7 182 84.6
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.0e-86 323.6 182 85.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.3e-86 323.2 173 89.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 85.2
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.2e-86 322.4 197 81.7
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 84.6
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.8e-86 321.6 176 86.9
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 5.0e-86 321.2 172 89.5
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 85.2
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 6.5e-86 320.9 172 90.7
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.5e-85 319.7 182 85.7
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.5e-85 318.9 173 88.4
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.5e-85 318.9 178 86.5
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 84.1
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 83.5
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 83.5
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.6e-84 316.2 176 85.8
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 85.7
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 83.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.0e-83 313.5 178 86.5
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 6.7e-83 310.8 177 84.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 2.0e-82 309.3 153 97.4
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 7.5e-82 307.4 174 83.9
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 9.7e-82 307.0 173 84.4
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 8.2e-81 303.9 174 83.3
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 8.2e-81 303.9 174 83.3
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-80 303.1 174 82.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 3.1e-80 302.0 174 82.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.1e-80 301.6 208 74.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.9e-78 295.4 182 81.3
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 5.0e-78 294.7 155 94.8
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.6e-76 289.7 183 79.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.1e-76 289.3 182 80.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.4e-75 286.6 182 78.0
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.0e-74 282.7 155 89.0
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 5.7e-74 281.2 149 88.6
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 4.8e-73 278.1 155 85.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 4.8e-73 278.1 151 89.4
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.3e-73 277.3 177 76.8
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.6e-68 263.1 155 81.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 5.7e-66 254.6 181 72.9
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 3.7e-65 251.9 139 83.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 8.3e-65 250.8 184 72.8
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.7e-63 245.7 128 89.8
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.3e-62 243.4 126 92.9
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 5.6e-61 238.0 130 85.4
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.2e-58 230.3 184 59.8
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 9.2e-56 220.7 177 58.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 9.2e-56 220.7 185 58.9
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 2.7e-55 219.2 155 72.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.7e-54 216.5 105 100.0
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-50 203.0 105 91.4
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 8.3e-49 197.6 105 89.5
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.2e-48 195.7 105 89.5
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 6.6e-46 188.0 101 88.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 4.0e-43 178.7 179 57.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 6.8e-43 177.9 100 85.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.1e-40 168.7 154 60.4
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.4e-40 168.3 92 88.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 9.2e-40 167.5 92 87.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-38 163.3 86 88.4
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.2e-36 157.1 91 76.9
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.9e-33 146.0 127 55.9
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.6e-31 140.2 87 75.9
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-30 137.5 92 76.1
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 6.9e-27 124.8 66 86.4
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.4e-26 122.1 70 87.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 8.4e-25 117.9 77 75.3
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.4e-17 91.7 48 85.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.8e-14 83.6 182 30.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.9e-14 82.4 182 30.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.9e-14 82.4 181 31.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.7e-14 81.6 182 32.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 32.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 32.4
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.3e-13 79.3 49 75.5
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 5.6e-13 78.6 181 31.5
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 5.6e-13 78.6 182 30.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 5.6e-13 78.6 183 29.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.4e-13 78.2 182 31.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.3e-12 77.4 185 29.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 29.1
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.6e-12 77.0 184 32.6
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 30.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.1e-12 76.6 181 32.0
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.1e-12 76.6 181 29.8
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 28.6
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 29.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 30.2
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 8.1e-12 74.7 58 60.3
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.1e-11 74.3 182 28.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.1e-11 72.8 181 28.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.1e-11 72.8 181 32.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.0e-11 72.4 181 28.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.9e-11 71.6 182 28.0
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 4.5e-10 68.9 182 27.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.9e-09 66.2 159 28.9
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.8e-09 65.9 137 32.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.4e-08 63.9 198 25.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.0e-06 57.8 133 29.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.3e-06 57.4 112 33.0
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 6.7e-06 55.1 150 27.3


User provided reference genes

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