Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.7e-54 215.7 105 100.0
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.7e-54 215.7 105 100.0
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.4e-53 212.6 105 98.1
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.2e-53 211.5 105 98.1
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 4.6e-52 207.6 105 96.2
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 4.6e-52 207.6 105 96.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 6.1e-52 207.2 105 96.2
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 6.1e-52 207.2 105 96.2
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 6.1e-52 207.2 105 95.2
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 7.9e-52 206.8 105 95.2
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.3e-51 206.1 105 95.2
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.3e-51 205.3 105 93.3
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.0e-51 204.9 105 94.3
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.0e-51 204.9 105 94.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 3.9e-51 204.5 105 93.3
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.9e-51 204.5 105 94.3
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 5.1e-51 204.1 105 93.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 5.1e-51 204.1 105 93.3
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 93.3
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 94.3
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 93.3
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 93.3
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 93.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 8.7e-51 203.4 105 93.3
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.1e-50 203.0 105 91.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.5e-50 202.6 105 92.4
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.9e-50 202.2 105 92.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.9e-50 202.2 105 91.4
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.9e-50 202.2 105 91.4
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.9e-50 202.2 105 92.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.3e-50 201.4 105 91.4
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 3.3e-50 201.4 105 92.4
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 3.3e-50 201.4 105 92.4
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 91.4
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 91.4
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 7.4e-50 200.3 105 91.4
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 7.4e-50 200.3 105 91.4
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 90.5
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 90.5
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 91.4
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 91.4
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 90.5
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.3e-49 199.5 105 91.4
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.3e-49 199.5 105 91.4
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.3e-49 199.5 105 89.5
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.3e-49 199.5 104 91.3
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.6e-49 199.1 105 90.5
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.6e-49 199.1 105 90.5
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 2.2e-49 198.7 105 91.4
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.8e-49 198.4 105 90.5
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.8e-49 198.4 105 90.5
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.8e-49 197.6 105 90.5
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 4.8e-49 197.6 105 89.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 4.8e-49 197.6 105 89.5
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 8.2e-49 196.8 105 89.5
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 8.2e-49 196.8 105 89.5
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 8.2e-49 196.8 103 90.3
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 8.2e-49 196.8 105 89.5
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.1e-48 196.4 105 88.6
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-48 196.4 100 92.0
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 88.6
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 89.5
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 88.6
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 87.6
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 2.4e-48 195.3 105 88.6
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 88.6
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 87.6
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 88.6
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 89.5
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 5.3e-48 194.1 105 88.6
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 6.9e-48 193.7 103 88.3
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.0e-48 193.4 105 87.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.6e-47 191.8 101 89.1
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.6e-47 191.8 105 86.7
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 3.4e-47 191.4 105 85.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 7.7e-47 190.3 105 86.7
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.0e-46 189.9 100 89.0
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 1.0e-46 189.9 100 89.0
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 1.7e-46 189.1 99 90.9
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 2.9e-46 188.3 99 89.9
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.8e-46 188.0 99 89.9
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 6.5e-46 187.2 100 88.0
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 8.5e-46 186.8 99 89.9
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.1e-45 186.4 105 86.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.4e-45 186.0 99 89.9
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.4e-45 186.0 105 85.7
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.4e-45 186.0 99 88.9
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 2.5e-45 185.3 99 88.9
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 3.2e-45 184.9 100 87.0
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 3.2e-45 184.9 100 87.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 3.2e-45 184.9 100 87.0
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 4.2e-45 184.5 100 86.0
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 4.2e-45 184.5 100 86.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 4.2e-45 184.5 105 86.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.2e-44 183.0 99 89.9
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.2e-44 183.0 105 83.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.6e-44 182.6 95 92.6
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.4e-43 179.5 120 75.0
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.3e-43 178.7 105 81.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 3.9e-43 177.9 98 85.7
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.1e-43 177.6 100 85.0
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 6.7e-43 177.2 95 88.4
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.1e-40 169.9 93 86.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.1e-40 168.3 92 88.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.1e-40 168.3 95 85.3
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 5.3e-40 167.5 92 87.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-38 162.9 86 88.4
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 9.4e-37 156.8 91 76.9
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 3.0e-35 151.8 103 66.0
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.5e-34 149.4 78 92.3
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 2.6e-34 148.7 105 69.5
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 7.4e-34 147.1 78 91.0
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 7.4e-34 147.1 78 91.0
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 9.7e-34 146.7 98 67.3
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 9.7e-34 146.7 78 91.0
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.8e-33 145.2 78 88.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 3.7e-33 144.8 104 65.4
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 4.1e-32 141.4 78 87.2
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 5.3e-32 141.0 78 85.9
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.7e-31 137.1 92 76.1
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.7e-31 137.1 100 66.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.2e-29 131.7 79 81.0
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.6e-28 129.4 108 65.7
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 4.0e-27 124.8 66 86.4
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 2.9e-22 108.6 65 80.0
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-17 91.7 48 85.4
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 9.5e-13 77.0 49 65.3
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 4.7e-12 74.7 58 60.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.3e-06 56.6 100 35.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.9e-06 55.5 100 35.0
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 8.6e-06 53.9 99 33.3


User provided reference genes

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