Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 4.1e-122 441.4 225 100.0
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.1e-110 402.5 225 90.2
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.4e-98 363.2 233 81.5
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 2.8e-94 349.0 233 77.7
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.3e-56 223.8 233 57.5
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 1.1e-55 220.7 225 57.3
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 7.4e-55 218.0 226 56.2
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.8e-53 213.4 235 53.2
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.9e-47 193.4 213 55.4
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 6.9e-29 131.7 250 37.6
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 5.9e-28 128.6 250 37.2
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 5.9e-28 128.6 250 37.2
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 7.7e-28 128.3 224 40.6
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 6.5e-27 125.2 209 42.1
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.2e-26 122.9 215 40.0
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 4.2e-26 122.5 240 37.9
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.2e-25 120.9 204 40.7
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.0e-24 117.9 215 38.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 5.1e-24 115.5 209 39.7
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 6.7e-24 115.2 215 38.1
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 3.3e-23 112.8 240 36.7
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 5.7e-23 112.1 251 35.5
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 5.7e-23 112.1 208 40.4
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 7.4e-23 111.7 260 34.6
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.4e-23 111.7 215 37.7
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.2e-22 110.2 233 36.1
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.4e-21 107.5 236 34.7
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 6.9e-21 105.1 256 33.6
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.2e-20 104.4 259 33.6
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 1.5e-20 104.0 240 35.4
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.5e-20 104.0 246 34.1
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.6e-20 103.2 274 34.3
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.5e-20 102.4 235 33.2
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.5e-20 102.4 268 35.1
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.5e-20 102.4 268 35.1
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.5e-20 102.4 268 35.1
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 7.7e-20 101.7 188 36.7
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 7.7e-20 101.7 259 32.0
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.0e-19 101.3 260 30.8
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.2e-19 100.1 284 31.3
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 2.9e-19 99.8 249 33.3
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 2.9e-19 99.8 256 32.0
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 2.9e-19 99.8 256 34.8
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 5.0e-19 99.0 218 37.2
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 5.0e-19 99.0 224 34.8
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 8.5e-19 98.2 197 37.6
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 8.5e-19 98.2 255 34.1
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.1e-18 97.8 258 32.2
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.4e-18 97.4 210 33.8
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.9e-18 97.1 226 36.7
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.9e-18 97.1 246 34.6
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.9e-18 97.1 244 35.2
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.5e-18 96.7 218 39.4
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 2.5e-18 96.7 244 34.0
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 3.2e-18 96.3 255 31.8
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 3.2e-18 96.3 229 35.4
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 4.2e-18 95.9 215 34.4
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 4.2e-18 95.9 216 38.0
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.2e-18 95.9 258 33.7
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 5.5e-18 95.5 249 32.9
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 7.2e-18 95.1 226 35.8
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.6e-17 94.0 231 34.6
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 2.7e-17 93.2 211 33.2
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.0e-16 91.3 194 36.6
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.4e-16 90.9 252 32.9
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.8e-16 90.5 207 34.8
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 2.3e-16 90.1 227 34.4
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 5.1e-16 89.0 246 31.7
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 6.7e-16 88.6 214 34.1
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 6.7e-16 88.6 243 32.9
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 2.0e-15 87.0 233 35.6
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 2.6e-15 86.7 215 35.3
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 4.4e-15 85.9 201 35.3
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 9.7e-15 84.7 212 34.4
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.8e-14 82.4 228 31.1
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.8e-14 82.4 220 33.2
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 6.3e-14 82.0 244 32.4
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 6.3e-14 82.0 220 34.1
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 8.2e-14 81.6 219 33.8
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 8.2e-14 81.6 246 31.7
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.4e-13 80.9 253 31.6
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 1.8e-13 80.5 236 32.2
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.8e-13 80.5 228 32.5
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 5.3e-13 79.0 140 40.7
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 5.3e-13 79.0 227 33.0
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 9.1e-13 78.2 240 33.3
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 9.1e-13 78.2 224 32.6
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.2e-12 77.8 218 33.0
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 2.6e-12 76.6 233 30.0
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 4.5e-12 75.9 247 31.2
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 5.9e-12 75.5 228 31.6
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 7.7e-12 75.1 253 30.0
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 2.9e-11 73.2 188 34.6
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 8.5e-11 71.6 210 31.9
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 8.5e-11 71.6 209 31.6
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.1e-10 71.2 218 31.2
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 2.5e-10 70.1 190 33.7
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 7.2e-10 68.6 188 34.0
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 9.4e-10 68.2 194 33.5
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 6.1e-09 65.5 234 30.8
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 6.1e-09 65.5 240 30.0
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 4.0e-08 62.8 104 43.3
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 6.7e-08 62.0 83 43.4
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 6.3e-06 55.5 235 27.7


User provided reference genes

Program Settings