Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 8.4e-88 327.0 169 100.0
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.6e-86 322.8 169 98.8
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 2.8e-75 285.4 169 90.5
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 2.0e-68 262.7 169 82.2
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 1.5e-65 253.1 169 79.9
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 9.1e-58 227.3 172 69.8
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 1.6e-57 226.5 174 70.7
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.0e-57 226.1 174 67.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.0e-56 223.8 169 72.2
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.5e-55 219.9 173 66.5
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.9e-55 219.5 172 66.9
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.5e-55 219.2 168 71.4
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.5e-55 219.2 169 68.0
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 4.2e-55 218.4 169 66.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.2e-54 216.9 176 68.8
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 4.7e-54 214.9 169 65.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 6.1e-54 214.5 169 66.3
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 6.1e-54 214.5 183 63.4
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.0e-54 214.2 173 64.7
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.4e-53 213.4 168 64.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.8e-53 213.0 181 63.0
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.8e-53 213.0 170 69.4
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.0e-53 212.2 172 65.1
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 4.0e-53 211.8 164 67.7
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 6.7e-53 211.1 175 63.4
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.5e-52 209.9 169 64.5
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 2.6e-52 209.1 171 66.1
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 9.7e-52 207.2 168 65.5
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.3e-51 206.8 161 64.0
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.3e-51 206.8 178 64.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.7e-51 206.5 167 62.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-50 202.6 170 62.9
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.4e-50 202.6 170 62.9
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 9.1e-50 200.7 179 60.3
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.5e-49 198.4 172 60.5
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.7e-49 197.6 164 63.4
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.0e-48 197.2 175 60.0
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.7e-48 196.4 167 62.3
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.2e-48 196.1 173 60.7
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 3.8e-48 195.3 170 61.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.0e-48 194.9 175 59.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 5.0e-48 194.9 175 60.6
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.5e-48 194.5 176 60.2
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 8.5e-48 194.1 171 60.8
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 8.5e-48 194.1 172 62.2
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.5e-47 193.4 175 60.6
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.9e-47 193.0 172 58.7
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 4.2e-47 191.8 164 62.2
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.2e-47 191.0 173 59.5
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 7.2e-47 191.0 172 59.9
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-46 190.3 176 59.7
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 2.7e-46 189.1 172 59.3
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 2.7e-46 189.1 172 59.3
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 2.7e-46 189.1 174 58.6
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.6e-46 188.7 168 63.1
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 4.7e-46 188.3 165 63.6
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 4.7e-46 188.3 109 86.2
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 6.1e-46 188.0 172 58.7
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 6.1e-46 188.0 178 57.3
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.0e-46 187.6 166 59.6
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.8e-45 186.4 177 58.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 2.3e-45 186.0 183 56.8
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 3.0e-45 185.7 179 56.4
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 3.0e-45 185.7 158 61.4
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.8e-45 184.1 173 57.2
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.0e-44 183.0 170 62.4
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.0e-44 183.0 168 59.5
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 3.4e-44 182.2 180 57.8
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 9.8e-44 180.6 171 59.1
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.3e-43 180.3 178 56.7
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.3e-43 180.3 169 58.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.7e-43 179.9 185 57.8
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.8e-43 179.1 167 58.1
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.3e-43 177.9 172 58.1
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.3e-43 177.6 179 53.6
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.3e-43 177.6 179 55.3
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 8.3e-43 177.6 179 55.3
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.8e-42 176.4 172 55.8
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.4e-42 176.0 171 57.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.1e-42 175.6 167 56.9
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 7.0e-42 174.5 178 53.4
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 9.1e-42 174.1 169 58.6
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 5.9e-41 171.4 158 56.3
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.3e-40 170.2 178 52.8
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.8e-40 168.7 168 55.4
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 5.0e-40 168.3 168 55.4
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.1e-39 167.2 161 57.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.5e-39 166.8 163 54.0
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.5e-39 166.8 135 63.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.3e-39 165.6 169 55.6
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 4.2e-39 165.2 169 52.7
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 4.2e-39 165.2 112 75.0
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 7.2e-39 164.5 164 53.7
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 7.2e-39 164.5 162 53.7
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.2e-38 163.7 104 79.8
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-38 163.7 240 43.3
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.8e-38 162.5 153 58.2
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 2.8e-38 162.5 162 52.5
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 4.7e-38 161.8 124 62.9
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.4e-37 160.2 157 53.5
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.8e-37 159.8 178 50.6
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 3.0e-37 159.1 164 53.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.0e-37 158.7 170 53.5
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.0e-37 158.7 165 50.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 5.2e-37 158.3 160 53.8
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.2e-37 158.3 151 57.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 5.2e-37 158.3 139 59.7
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 5.7e-36 154.8 174 50.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 6.3e-35 151.4 168 49.4
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.8e-34 149.8 130 59.2
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.4e-34 149.4 133 59.4
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.1e-34 149.1 173 49.7
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 4.1e-34 148.7 133 59.4
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 4.1e-34 148.7 171 49.1
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 9.2e-34 147.5 106 69.8
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.2e-33 147.1 166 48.8
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.6e-33 146.7 129 59.7
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.5e-33 145.6 169 53.3
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 7.8e-33 144.4 162 53.1
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 4.3e-31 138.7 187 46.0
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 5.2e-29 131.7 173 46.2
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.5e-28 130.2 97 69.1
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.7e-27 126.7 106 59.4
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.2e-26 122.5 185 41.6
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.2e-26 122.5 76 80.3
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 4.1e-26 122.1 112 55.4
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.0e-24 117.5 106 55.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.3e-23 112.5 127 50.4
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 9.5e-23 110.9 123 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 4.0e-21 105.5 163 39.3
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 7.5e-20 101.3 112 57.1
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 7.8e-17 91.3 103 49.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 7.8e-17 91.3 103 49.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.3e-16 89.7 97 51.5
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 9.9e-12 74.3 106 39.6
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.7e-09 66.2 62 53.2
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.7e-08 63.5 154 29.2
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 1.2e-06 57.4 103 35.9
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-06 56.6 67 47.8
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 2.8e-06 56.2 66 47.0


User provided reference genes

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