Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 6.0e-170 600.9 333 100.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 4.7e-159 564.7 329 91.5
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.6e-135 486.5 311 81.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 2.1e-135 486.1 302 81.8
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-113 412.9 243 83.1
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.9e-113 412.1 324 71.0
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.9e-113 412.1 324 71.0
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.1e-112 410.6 322 71.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 4.3e-112 408.7 351 66.4
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 4.3e-112 408.7 257 79.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.8e-110 403.3 313 67.7
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 2.4e-110 402.9 306 69.3
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 4.1e-110 402.1 274 77.0
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 9.1e-110 401.0 258 78.7
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.5e-109 400.2 300 68.0
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 2.0e-109 399.8 351 68.4
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.5e-109 398.7 313 67.1
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 5.9e-109 398.3 254 78.0
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 5.9e-109 398.3 254 78.0
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 7.7e-109 397.9 303 68.6
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.3e-108 397.1 300 70.7
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.9e-108 396.0 293 69.6
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.9e-108 396.0 285 71.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 8.5e-108 394.4 316 65.8
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 8.5e-108 394.4 274 73.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.1e-107 394.0 286 74.8
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 7.2e-107 391.3 256 77.3
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 2.1e-106 389.8 312 67.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.7e-106 389.4 279 71.7
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 4.7e-106 388.7 256 77.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 6.1e-106 388.3 235 81.3
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 7.9e-106 387.9 240 79.2
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 7.9e-106 387.9 281 69.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 7.9e-106 387.9 261 73.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.0e-105 387.5 246 79.3
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.0e-105 386.0 245 75.1
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.1e-104 384.0 263 73.0
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.1e-104 384.0 263 73.0
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.0e-104 383.3 304 70.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.6e-104 382.9 306 71.2
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.3e-104 382.5 307 64.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 5.7e-104 381.7 271 70.5
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 5.7e-104 381.7 304 65.5
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 9.7e-104 380.9 287 67.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.2e-103 379.8 332 66.3
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.2e-103 379.8 291 73.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 2.2e-103 379.8 291 73.5
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.8e-103 379.4 254 74.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.8e-103 379.4 255 73.3
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.7e-103 379.0 256 74.2
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 4.8e-103 378.6 254 74.4
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.8e-103 378.6 254 74.4
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.8e-103 378.6 254 74.4
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.8e-103 378.6 254 74.4
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.8e-103 378.6 257 73.5
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 6.3e-103 378.3 252 73.8
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 8.2e-103 377.9 254 73.6
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 8.2e-103 377.9 288 68.8
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.1e-102 377.5 257 73.5
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.4e-102 377.1 248 75.8
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.4e-102 376.3 278 69.8
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 3.1e-102 375.9 284 70.4
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 3.1e-102 375.9 253 75.9
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.0e-102 374.8 284 67.6
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.0e-102 374.8 282 68.4
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 9.1e-102 374.4 270 70.4
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 9.1e-102 374.4 286 67.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.2e-101 374.0 245 75.5
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-101 374.0 271 69.4
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.5e-101 373.6 257 72.8
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.5e-101 373.6 245 75.5
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.5e-101 372.5 266 69.9
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.5e-101 372.5 254 72.0
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 4.5e-101 372.1 254 72.0
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 5.9e-101 371.7 254 71.7
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 7.7e-101 371.3 254 72.4
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.0e-100 370.9 255 73.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.7e-100 370.2 326 60.7
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.2e-100 369.8 255 71.0
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 3.8e-100 369.0 255 71.8
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 8.5e-100 367.9 278 67.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.4e-99 367.1 248 73.8
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.9e-99 366.7 243 73.3
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.5e-99 366.3 234 75.6
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 3.2e-99 365.9 310 60.3
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 3.2e-99 365.9 248 73.4
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 4.2e-99 365.5 255 70.6
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 7.2e-99 364.8 254 73.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.1e-98 363.2 227 77.5
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.7e-98 362.1 243 71.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.7e-98 362.1 229 76.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 4.7e-98 362.1 245 73.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.7e-98 362.1 303 60.7
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 4.7e-98 362.1 223 78.0
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 6.1e-98 361.7 252 72.6
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 8.0e-98 361.3 288 64.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 8.0e-98 361.3 288 64.2
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.8e-97 360.1 259 71.0
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.0e-97 359.4 231 76.6
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 7.4e-96 354.8 259 69.1
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-95 354.0 247 70.0
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.7e-95 353.6 226 75.7
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.2e-95 353.2 230 73.9
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 5.0e-92 342.0 215 75.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.2e-90 337.4 279 62.4
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 8.0e-90 334.7 263 63.5
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 5.3e-86 322.0 194 78.9
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.5e-83 313.2 238 65.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.4e-81 307.4 238 64.7
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.0e-81 306.2 179 83.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 3.0e-81 306.2 178 82.6
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 8.8e-81 304.7 179 82.1
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.0e-80 303.5 230 63.9
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.4e-80 302.8 230 63.9
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.3e-79 298.5 284 56.0
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.0e-77 293.5 284 57.4
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 6.6e-76 288.5 248 58.1
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.9e-75 287.0 249 57.4
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-73 280.8 217 66.4
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 7.5e-72 275.0 222 60.8
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.1e-70 271.2 220 65.5
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 5.4e-70 268.9 192 71.4
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.1e-67 261.2 198 71.7
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.6e-64 250.0 151 77.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.4e-64 249.2 151 79.5
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.5e-61 239.6 164 76.8
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 4.4e-56 222.6 132 79.5
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.9e-54 217.2 217 47.9
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.1e-54 215.3 217 47.5
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.6e-50 204.1 300 42.7
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.4e-49 201.1 351 46.7
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.6e-45 187.6 106 84.9
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.6e-45 187.6 106 85.8
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 3.5e-45 186.4 106 84.0
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-44 184.1 106 83.0
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.7e-44 184.1 257 45.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 3.0e-44 183.3 106 84.0
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-44 183.3 106 84.0
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-44 182.6 106 83.0
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 5.1e-44 182.6 106 83.0
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.9e-43 180.6 106 82.1
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 5.6e-43 179.1 264 42.4
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 4.7e-42 176.0 102 82.4
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 4.7e-42 176.0 102 82.4
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 5.8e-40 169.1 230 42.2
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.2e-39 167.2 271 35.8
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.4e-39 165.2 163 57.1
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 4.0e-33 146.4 91 76.9
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 6.9e-33 145.6 106 70.8
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.2e-31 140.6 78 89.7
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-31 140.6 78 89.7
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-31 140.6 78 89.7
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.7e-29 133.7 120 59.2
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 6.6e-28 129.0 130 56.9
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.3e-26 124.8 106 59.4
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.8e-26 123.6 95 68.4
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 9.0e-25 118.6 91 61.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.5e-24 116.3 82 68.3
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 5.4e-22 109.4 98 51.0
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 9.3e-22 108.6 59 89.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 3.9e-20 103.2 81 59.3
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 5.1e-20 102.8 61 75.4
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 5.1e-20 102.8 81 65.4
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.5e-19 101.3 63 73.0
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.8e-17 94.4 188 30.9
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 6.0e-13 79.3 44 84.1
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 9.6e-11 72.0 72 55.6
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 9.6e-11 72.0 71 52.1


User provided reference genes

Program Settings