Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.7e-238 828.2 397 100.0
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 2.3e-184 649.0 397 79.3
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.8e-163 578.6 398 71.9
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.4e-156 555.4 398 71.9
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.1e-153 546.2 397 69.0
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.2e-150 536.2 399 65.9
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 5.0e-139 498.4 443 58.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 9.4e-138 494.2 312 75.3
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.2e-137 493.8 437 57.2
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 4.8e-134 481.9 451 55.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.2e-132 477.2 449 56.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.6e-132 476.1 458 56.3
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.9e-132 474.9 312 70.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.2e-131 473.0 301 76.1
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 3.2e-130 469.2 454 53.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-128 463.8 456 54.6
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 8.8e-128 461.1 451 54.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.8e-126 456.1 452 54.2
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.8e-126 456.1 442 55.7
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.5e-124 449.1 406 56.7
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.1e-121 439.9 447 52.3
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 6.1e-121 438.3 310 73.9
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.2e-119 434.1 449 51.7
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.4e-119 432.2 449 51.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 5.7e-119 431.8 458 50.4
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 7.5e-119 431.4 482 49.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 3.7e-118 429.1 454 50.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 3.5e-116 422.5 436 53.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 5.0e-115 418.7 451 49.9
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 6.5e-115 418.3 444 50.2
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.1e-114 417.5 464 49.1
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.2e-114 416.0 438 50.2
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 4.2e-114 415.6 465 49.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.2e-114 415.6 436 51.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 5.5e-114 415.2 458 49.1
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 2.7e-113 412.9 452 48.0
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 6.1e-113 411.8 363 57.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.0e-112 411.0 457 49.2
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.4e-112 410.6 425 52.0
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.8e-112 410.2 454 48.9
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.2e-112 408.7 455 48.6
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.2e-112 408.7 455 48.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 6.8e-112 408.3 454 48.2
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.8e-112 408.3 458 47.4
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-111 407.5 454 48.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.6e-111 406.4 451 49.4
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.8e-111 404.4 458 46.7
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.8e-110 402.9 408 50.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 6.3e-110 401.7 417 49.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.4e-109 400.6 418 50.2
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.8e-109 400.2 451 48.1
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.8e-109 400.2 316 61.1
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.1e-109 399.4 417 49.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 4.1e-109 399.1 437 50.1
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 4.1e-109 399.1 437 50.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 7.0e-109 398.3 418 49.5
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.2e-108 397.5 453 48.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.6e-108 397.1 348 55.7
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 2.0e-108 396.7 420 48.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.5e-108 395.6 418 49.5
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-107 392.5 447 47.2
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 3.8e-107 392.5 467 46.9
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 3.3e-106 389.4 421 49.4
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 7.2e-106 388.3 408 49.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.2e-105 387.5 430 50.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 3.6e-105 386.0 367 54.5
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.0e-104 382.5 465 46.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.7e-102 375.9 413 49.6
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 8.3e-102 374.8 431 45.9
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-101 374.4 371 52.8
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.4e-101 374.0 427 47.3
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.4e-101 373.2 415 48.4
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.0e-100 370.2 420 50.0
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.7e-99 367.1 358 54.2
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.1e-98 364.4 411 47.2
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.9e-98 363.6 389 51.7
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.2e-97 360.9 430 45.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.7e-97 359.0 425 45.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 3.1e-96 356.3 414 48.8
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.8e-96 355.1 476 42.2
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 8.9e-96 354.8 425 45.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 8.9e-96 354.8 417 46.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 9.8e-95 351.3 416 44.7
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.9e-94 349.7 418 47.8
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 4.1e-93 345.9 422 46.0
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 9.2e-93 344.7 417 47.5
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.0e-92 343.6 419 47.0
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.7e-91 340.5 341 50.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 3.0e-91 339.7 419 46.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.3e-90 336.3 337 55.2
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 4.3e-90 335.9 327 52.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.5e-90 334.7 340 49.7
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.8e-89 333.2 459 41.4
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 1.8e-88 330.5 424 46.0
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.3e-88 330.1 420 46.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 2.3e-88 330.1 417 43.4
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 8.9e-88 328.2 418 46.4
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.9e-86 323.2 425 46.4
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 3.2e-85 319.7 423 46.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 3.3e-82 309.7 507 39.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 6.8e-80 302.0 300 52.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.2e-79 301.2 430 43.5
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.6e-76 290.8 415 46.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.1e-72 276.6 262 54.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.0e-71 273.9 495 34.7
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.7e-70 270.8 416 38.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.2e-70 270.4 272 52.9
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.5e-66 257.7 303 47.5
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.3e-66 255.4 417 36.7
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 9.6e-66 255.0 259 52.1
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-65 254.2 404 37.1
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 6.4e-62 242.3 247 53.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.9e-61 240.7 329 43.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.4e-56 223.8 493 32.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.4e-54 215.3 542 29.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.2e-52 211.5 248 45.6
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 2.1e-52 210.7 148 64.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.1e-45 188.3 332 37.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 6.7e-43 179.1 130 64.6
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.5e-42 177.2 228 43.0
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.3e-42 176.8 232 42.7
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-41 174.1 134 59.0
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.7e-41 173.3 144 54.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-40 171.8 209 44.5
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.2e-30 137.5 162 45.7
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.8e-27 127.9 205 37.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 8.8e-27 125.6 274 32.1
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 3.3e-26 123.6 94 60.6
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 3.8e-22 110.2 101 54.5
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.6e-18 97.4 150 42.0
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 5.5e-13 79.7 57 64.9
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 2.6e-10 70.9 71 52.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 3.1e-08 63.9 52 51.9
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.8e-06 57.0 37 67.6


User provided reference genes

Program Settings