Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.8e-84 314.7 148 100.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.5e-80 302.0 148 95.9
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 7.2e-75 283.9 148 91.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.7e-74 282.0 148 90.5
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 6.3e-71 270.8 148 86.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.5e-69 264.6 148 86.5
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 5.9e-69 264.2 148 84.5
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 7.7e-69 263.8 148 86.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.7e-68 262.7 148 83.8
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 8.5e-68 260.4 148 83.8
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.4e-67 259.6 148 85.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 3.2e-67 258.5 148 84.5
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.2e-67 258.5 148 83.8
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 4.2e-67 258.1 148 83.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 5.5e-67 257.7 148 83.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-66 256.5 148 84.5
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.1e-66 255.8 148 81.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.1e-66 255.8 148 81.8
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.0e-65 253.4 146 82.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 148 80.4
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.9e-65 251.5 150 82.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 81.1
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 81.1
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.8e-65 250.4 148 80.4
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.8e-65 250.4 148 81.1
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 82.4
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 82.4
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.1e-64 250.0 141 82.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 79.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 79.1
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 4.4e-64 248.1 148 81.1
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.4e-64 248.1 148 81.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.4e-64 248.1 148 81.1
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.7e-63 246.1 148 81.1
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 80.4
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 4.8e-63 244.6 148 78.4
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 148 79.7
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.3e-63 244.2 148 79.7
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 6.3e-63 244.2 149 81.2
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 8.2e-63 243.8 149 80.5
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.1e-62 243.4 148 81.8
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 77.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 77.0
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 4.1e-62 241.5 150 76.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 80.4
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 78.4
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 7.0e-62 240.7 148 77.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 9.1e-62 240.4 147 77.6
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 9.1e-62 240.4 148 75.7
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 77.0
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 79.7
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.6e-61 239.6 150 78.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 77.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 77.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 75.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.5e-61 238.4 147 75.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 78.4
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 78.4
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 77.7
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 77.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 75.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 7.7e-61 237.3 148 75.7
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 7.7e-61 237.3 148 75.7
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 7.7e-61 237.3 150 76.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-60 236.9 149 78.5
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 77.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 75.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 75.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 75.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 76.7
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 76.4
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.2e-60 235.7 133 82.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.2e-60 235.7 149 77.2
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.9e-60 235.3 133 82.7
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.9e-60 235.3 133 82.7
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.9e-60 235.3 149 76.5
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 76.5
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 5.0e-60 234.6 148 74.3
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 75.0
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 76.4
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.5e-59 233.0 150 74.7
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.5e-59 233.0 149 75.2
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.5e-59 233.0 148 75.7
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 78.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 75.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 75.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.2e-59 231.5 148 75.0
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 5.5e-59 231.1 148 72.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.5e-59 231.1 148 75.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 7.2e-59 230.7 150 74.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 73.6
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 74.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 76.4
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.6e-58 229.6 139 79.9
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 73.6
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 73.6
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.7e-58 228.0 148 70.9
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-57 226.1 148 73.6
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.3e-57 225.7 148 72.3
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.0e-57 225.3 142 76.1
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 5.2e-57 224.6 145 73.1
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-56 223.4 132 82.6
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-56 223.4 148 72.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-56 223.0 150 71.3
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.5e-56 223.0 153 72.5
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.3e-56 221.9 148 72.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 4.4e-56 221.5 149 72.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 72.3
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.7e-55 219.5 148 70.9
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 71.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 71.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 71.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 149 73.2
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.8e-55 218.0 149 73.2
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 4.8e-55 218.0 140 73.6
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 6.3e-55 217.6 149 73.8
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 6.3e-55 217.6 149 73.8
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 6.3e-55 217.6 149 73.8
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.2e-55 217.2 152 71.7
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-54 216.9 150 71.3
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.4e-54 216.5 151 70.9
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 68.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 70.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 68.7
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.1e-54 215.3 148 68.9
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 70.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 7.7e-53 210.7 127 78.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-52 209.9 145 69.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.7e-52 209.5 148 68.9
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.5e-51 205.7 149 67.8
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.5e-51 205.7 149 67.8
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.5e-51 205.7 149 67.8
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.2e-51 205.3 151 65.6
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 134 76.9
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.1e-50 201.1 135 74.8
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 66.9
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 64.2
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.0e-49 198.4 151 67.5
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 5.2e-49 198.0 124 74.2
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.2e-48 196.8 148 65.5
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.7e-48 194.5 115 80.0
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.2e-47 192.6 148 62.8
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-40 170.2 148 64.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 5.4e-38 161.4 103 76.7
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.6e-37 159.8 148 58.8
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.7e-37 159.1 148 60.8
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.0e-36 157.1 103 76.7
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 8.6e-36 154.1 98 79.6
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.6e-34 149.8 149 53.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.2e-32 143.7 122 56.6
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.8e-25 119.8 124 50.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.6e-21 106.7 128 48.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.1e-19 100.5 69 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 4.3e-19 98.6 87 51.7
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.1e-18 96.3 77 70.1
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 3.6e-10 68.9 86 37.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 4.0e-09 65.5 37 73.0


User provided reference genes

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