Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 6.0e-269 930.2 466 100.0
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 8.7e-252 873.2 466 92.5
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.5e-243 845.9 466 90.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.9e-238 828.9 456 89.9
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.8e-226 788.5 464 83.8
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 4.8e-226 787.7 467 83.9
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 5.9e-224 780.8 466 83.3
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 5.5e-222 774.2 444 84.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.2e-218 762.3 454 84.1
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 3.5e-216 755.0 460 80.7
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.2e-215 752.3 448 81.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 6.5e-215 750.7 459 81.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.1e-213 745.7 460 81.3
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-209 733.4 448 79.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 6.6e-199 697.6 458 75.3
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.6e-199 697.2 442 76.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-198 696.8 458 75.5
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.5e-198 696.4 458 75.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 6.1e-197 691.0 492 71.5
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.4e-196 689.9 442 76.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.0e-195 686.0 464 74.6
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.0e-195 686.0 464 74.6
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.7e-195 684.5 464 74.6
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 5.7e-195 684.5 452 74.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-194 683.3 464 74.1
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-194 683.3 464 74.1
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.3e-194 683.3 429 77.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.8e-194 682.2 429 77.6
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.7e-194 681.8 429 77.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 4.9e-194 681.4 454 75.6
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 6.3e-194 681.0 461 73.5
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 8.3e-194 680.6 459 73.0
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 4.1e-193 678.3 438 75.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.1e-193 678.3 432 76.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.2e-193 677.2 442 75.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.2e-192 676.8 446 74.7
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.2e-192 676.8 438 76.3
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.6e-192 676.4 460 74.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 4.5e-192 674.9 454 72.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.5e-192 674.9 432 75.9
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-191 673.3 447 73.8
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.7e-191 672.9 458 72.5
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-191 672.2 464 73.5
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.9e-191 671.8 460 72.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 3.9e-191 671.8 447 74.3
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 5.0e-191 671.4 434 76.3
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.0e-191 671.4 451 73.4
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-190 670.2 451 73.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.5e-190 669.1 455 72.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.6e-190 667.9 456 72.1
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 7.3e-190 667.5 443 73.6
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.3e-190 667.5 435 75.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 7.3e-190 667.5 435 75.4
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.2e-189 666.8 436 73.6
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-189 666.4 456 72.8
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 3.6e-189 665.2 443 74.0
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 6.1e-189 664.5 438 75.3
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 6.1e-189 664.5 434 74.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.0e-189 664.1 457 70.7
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.0e-189 664.1 460 71.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.0e-188 663.7 447 73.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.4e-188 663.3 449 72.8
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.8e-188 662.9 447 72.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.3e-188 662.5 452 71.5
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.3e-188 662.5 437 74.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.1e-188 662.1 463 70.6
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.0e-188 661.8 434 74.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 4.0e-188 661.8 473 70.4
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.0e-188 661.8 449 72.8
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.2e-188 661.4 435 74.9
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 6.8e-188 661.0 456 72.1
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 8.9e-188 660.6 443 73.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 2.0e-187 659.4 460 71.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.4e-187 658.7 431 74.5
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.4e-187 658.7 461 71.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 5.8e-187 657.9 459 70.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.5e-187 657.5 445 73.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 9.8e-187 657.1 463 70.6
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.8e-187 657.1 458 71.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.3e-186 656.8 432 73.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.3e-186 656.8 431 75.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.9e-186 655.6 448 71.7
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.7e-186 655.2 430 73.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 3.7e-186 655.2 461 70.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 3.7e-186 655.2 431 74.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 3.7e-186 655.2 461 70.3
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.9e-186 654.8 440 73.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.9e-185 652.9 445 73.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.2e-185 652.1 448 73.2
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 4.1e-185 651.7 445 73.0
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 9.2e-185 650.6 432 74.3
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.2e-184 650.2 449 73.1
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.6e-184 649.8 431 74.5
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.5e-184 648.7 440 70.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.0e-183 647.1 430 73.0
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.0e-183 645.6 442 71.5
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.0e-183 644.8 453 70.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.5e-182 642.5 447 73.4
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.3e-182 642.1 452 68.8
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 4.3e-182 641.7 440 71.6
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.1e-180 637.1 440 71.8
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.1e-180 635.6 452 68.6
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 6.8e-180 634.4 453 69.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-179 633.6 445 69.0
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-179 633.6 444 68.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-179 633.3 461 68.3
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.0e-179 632.9 456 67.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.6e-179 632.5 418 74.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 9.8e-179 630.6 442 69.7
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.4e-177 626.7 426 71.8
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 7.1e-177 624.4 458 67.7
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.0e-175 620.5 426 70.4
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.3e-174 615.5 408 74.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.2e-173 613.6 434 68.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.2e-173 613.6 434 68.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.2e-173 613.6 450 67.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.2e-173 613.6 408 74.5
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.2e-173 613.6 429 68.8
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 3.6e-173 612.1 434 68.4
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.7e-173 611.7 436 68.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 8.1e-173 610.9 442 68.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 3.1e-172 609.0 436 67.9
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 6.8e-172 607.8 436 67.7
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.2e-171 607.1 432 67.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.5e-171 606.7 425 69.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.6e-171 605.9 439 66.5
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 9.9e-171 604.0 412 71.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.4e-169 598.2 461 65.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 5.4e-169 598.2 436 67.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.6e-168 596.7 468 63.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.7e-167 593.2 431 67.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.9e-167 592.0 435 66.9
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.6e-165 586.6 452 65.0
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.1e-165 586.3 451 66.5
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 6.2e-165 584.7 457 63.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 5.2e-164 581.6 385 73.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.7e-162 576.6 390 72.8
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.2e-160 570.5 365 75.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 8.7e-159 564.3 386 72.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-156 557.0 387 71.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.4e-156 556.2 380 71.6
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.3e-156 555.1 437 65.4
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 4.3e-150 535.4 370 72.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.7e-144 516.2 445 61.1
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.7e-143 511.1 430 60.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.1e-137 491.5 429 56.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.6e-136 488.8 419 58.7
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.0e-131 473.4 436 57.8
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.9e-127 459.1 436 53.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.9e-126 456.8 424 56.4
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.0e-118 430.3 309 66.0
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.1e-113 414.5 232 84.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.6e-104 384.0 430 47.9
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 6.1e-104 382.1 284 65.5
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 5.2e-103 379.0 243 76.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-98 364.8 271 65.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.5e-97 360.9 439 46.5
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.7e-96 355.9 455 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.0e-90 338.2 402 46.0
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-75 288.1 270 61.5
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 5.0e-66 256.1 165 73.9
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.0e-50 205.3 165 64.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-47 193.7 113 81.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.3e-40 171.8 443 30.2
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-38 164.1 90 83.3
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.1e-35 154.5 126 57.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 3.5e-35 153.7 453 28.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 4.8e-24 116.7 87 64.4
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.9e-20 104.8 66 78.8
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.2e-20 103.6 84 60.7
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 6.1e-11 73.2 63 54.0
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-06 57.8 201 26.4
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.5e-06 57.0 58 53.4


User provided reference genes

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