Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.4e-229 798.5 403 100.0
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 3.3e-215 751.5 403 95.0
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.4e-197 693.0 404 86.9
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.0e-196 689.1 404 86.6
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.7e-182 642.9 405 81.0
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.3e-182 641.0 406 80.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.6e-180 636.3 407 80.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.2e-178 628.6 405 80.2
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 5.5e-178 627.9 398 80.7
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.6e-177 626.3 408 78.7
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 8.0e-177 624.0 405 78.8
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.0e-175 619.4 405 79.3
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 9.7e-175 617.1 405 76.8
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.3e-174 616.7 405 76.8
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.1e-173 611.7 381 81.6
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.1e-157 560.5 345 84.3
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 2.4e-157 559.3 409 69.7
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 5.0e-155 551.6 411 69.1
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.1e-154 550.4 413 69.5
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.0e-152 543.9 408 67.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-151 540.4 412 66.0
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-151 540.4 412 66.0
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-151 539.3 412 66.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.7e-150 535.4 406 67.7
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 3.7e-150 535.4 413 67.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 4.9e-150 535.0 412 66.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.9e-150 535.0 412 66.0
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 6.4e-150 534.6 417 65.9
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.7e-147 526.6 411 65.7
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.1e-146 523.9 411 65.2
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 4.3e-146 521.9 412 64.6
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 4.7e-145 518.5 412 64.3
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 8.9e-144 514.2 413 63.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.0e-143 513.1 404 65.8
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 7.5e-143 511.1 411 64.0
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-142 510.4 409 63.3
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.3e-142 510.4 411 62.3
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.3e-142 510.4 418 62.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 2.2e-142 509.6 397 65.7
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.6e-140 501.9 406 63.1
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 8.6e-139 497.7 408 61.3
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.1e-138 497.3 439 58.8
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.3e-138 494.6 410 62.0
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.5e-138 494.2 469 57.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.6e-137 493.4 410 62.0
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.1e-137 493.0 408 62.0
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.8e-137 492.7 408 60.5
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 8.1e-137 491.1 409 62.6
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.1e-136 490.7 410 60.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.3e-136 489.6 410 61.5
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 3.1e-136 489.2 409 61.1
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 8.9e-136 487.6 381 64.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.4e-135 485.3 397 60.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.9e-134 481.9 373 63.8
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 8.3e-134 481.1 409 59.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 3.2e-133 479.2 409 61.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 5.4e-133 478.4 408 62.5
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 7.1e-133 478.0 386 61.7
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 3.5e-132 475.7 411 59.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.7e-131 473.4 381 62.5
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.9e-131 472.2 409 59.4
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.1e-130 470.7 387 61.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 3.3e-130 469.2 406 60.1
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.3e-130 468.8 414 58.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 5.6e-130 468.4 412 59.5
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.3e-130 468.0 418 57.7
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.6e-129 465.7 410 57.6
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.3e-128 463.0 409 58.7
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.3e-128 463.0 417 57.1
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.6e-127 459.5 412 57.5
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.7e-126 456.8 416 58.7
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.4e-125 453.0 408 58.1
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.6e-124 450.3 385 59.7
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.7e-124 449.5 396 57.6
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.9e-122 443.4 389 56.3
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 1.6e-121 440.3 414 58.0
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.6e-121 440.3 361 63.2
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 8.1e-121 438.0 419 55.6
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.1e-120 437.6 388 57.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.4e-120 436.4 351 63.2
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 4.0e-120 435.6 403 54.1
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 5.2e-120 435.3 396 55.1
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.0e-119 433.3 411 55.7
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.6e-119 433.0 343 65.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.3e-118 430.6 404 56.4
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 4.9e-118 428.7 347 62.5
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 6.4e-118 428.3 404 56.2
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.4e-118 427.9 403 56.6
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.1e-117 427.6 403 56.6
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.4e-117 427.2 407 56.3
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.2e-116 424.1 376 58.8
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 7.3e-114 414.8 366 60.9
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.1e-112 411.0 360 57.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.4e-112 410.6 342 60.2
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.1e-112 409.5 387 54.8
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.5e-111 407.1 414 53.6
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 9.9e-111 404.4 405 54.6
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.2e-108 397.5 417 53.2
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.2e-108 397.5 434 49.1
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 7.9e-108 394.8 409 53.1
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 8.7e-107 391.3 347 57.3
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.2e-103 380.9 350 55.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.3e-102 377.5 452 44.5
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.3e-102 377.5 465 44.3
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.8e-102 375.9 299 64.9
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 2.0e-87 327.0 445 41.6
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.1e-82 311.2 369 43.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 2.5e-82 310.1 468 37.6
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.2e-81 307.0 265 58.9
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.6e-76 290.8 315 49.2
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 4.7e-76 289.3 215 65.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.9e-71 272.3 352 48.6
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.3e-70 271.2 230 63.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-69 266.9 190 68.9
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 3.9e-67 259.6 194 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.2e-62 243.8 309 42.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.5e-61 240.4 183 62.8
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.6e-60 236.5 270 50.0
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.5e-53 214.5 156 68.6
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 8.6e-46 188.7 411 33.1
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.8e-43 179.1 131 67.9
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.4e-40 171.4 140 64.3
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 5.9e-39 166.0 319 32.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.7e-38 164.5 148 56.8
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 2.1e-36 157.5 277 37.9
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-34 151.8 120 64.2
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.6e-30 135.6 335 28.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-29 132.1 136 50.0
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 9.5e-29 132.1 94 64.9
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.2e-28 131.7 594 24.6
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 3.6e-28 130.2 165 45.5
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.9e-21 107.8 79 67.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 5.1e-14 83.2 90 46.7
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.1e-11 75.5 49 69.4
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 6.8e-11 72.8 46 73.9
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.7e-09 68.2 81 42.0
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.7e-09 68.2 348 24.7
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.2e-08 63.9 114 36.0
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 1.7e-06 58.2 31 80.6


User provided reference genes

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