Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 9.8e-116 420.2 227 100.0
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.8e-101 372.9 220 90.5
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.1e-97 359.4 221 86.9
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.7e-97 359.0 222 88.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 7.4e-71 271.2 225 68.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 9.3e-66 254.2 222 66.7
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.6e-65 253.4 218 67.9
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.5e-65 252.3 218 66.1
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 6.7e-64 248.1 218 66.5
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 5.3e-61 238.4 213 63.8
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 5.0e-59 231.9 216 59.3
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.7e-57 226.1 214 57.5
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 1.0e-56 224.2 220 54.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.0e-56 222.6 217 59.0
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.5e-55 219.5 220 54.1
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.5e-55 219.5 214 56.5
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.3e-54 217.2 223 54.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-53 213.4 214 57.5
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 2.4e-53 213.0 230 53.9
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 5.3e-53 211.8 214 57.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.2e-52 210.7 214 58.9
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.0e-52 209.9 214 57.0
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.4e-52 209.1 214 57.0
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 5.9e-52 208.4 213 58.2
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 5.9e-52 208.4 214 57.0
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 7.7e-52 208.0 211 57.3
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.3e-51 207.2 212 58.5
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.2e-51 206.5 217 56.2
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.2e-51 206.5 215 56.3
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.9e-51 206.1 214 57.0
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 3.8e-51 205.7 214 56.5
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 5.0e-51 205.3 214 57.5
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 6.5e-51 204.9 216 55.1
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 7.2e-50 201.4 214 55.1
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 7.2e-50 201.4 214 56.5
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 9.4e-50 201.1 209 57.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.1e-49 199.9 218 53.2
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.7e-49 199.5 214 55.1
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.7e-49 199.5 217 53.0
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.4e-48 197.2 217 52.5
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 2.3e-48 196.4 210 54.3
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.0e-48 196.1 218 55.5
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 5.1e-48 195.3 215 55.8
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 5.1e-48 195.3 216 51.9
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 6.7e-48 194.9 216 51.4
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.6e-47 193.0 220 51.4
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.3e-46 190.7 221 53.8
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.7e-46 189.1 217 51.2
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.4e-45 187.2 210 51.0
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 4.1e-45 185.7 211 50.7
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 9.1e-45 184.5 211 52.1
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.0e-44 183.3 214 51.4
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 4.5e-44 182.2 201 53.7
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.5e-44 182.2 213 51.6
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 7.7e-44 181.4 211 50.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 7.7e-44 181.4 214 50.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.9e-43 179.5 211 52.1
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.9e-43 179.5 214 49.5
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.8e-43 179.1 211 51.7
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 5.0e-43 178.7 175 58.9
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 8.5e-43 177.9 213 49.8
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.9e-42 176.8 219 50.7
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 7.2e-42 174.9 224 47.8
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 9.4e-42 174.5 214 48.1
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.1e-41 173.3 209 52.6
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 4.7e-41 172.2 225 48.9
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 8.0e-41 171.4 202 50.0
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.3e-40 169.9 203 53.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.0e-40 169.5 207 48.8
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 8.8e-40 167.9 212 47.6
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.5e-39 167.2 212 45.8
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-39 167.2 213 46.9
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 6.3e-38 161.8 208 47.1
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 8.2e-38 161.4 217 47.9
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.4e-37 160.6 208 46.6
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.4e-37 159.8 212 43.9
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.0e-36 156.8 218 46.8
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.6e-36 156.4 214 44.4
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.6e-36 156.4 213 45.5
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.5e-36 156.0 212 46.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.0e-35 154.5 211 45.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.2e-35 153.3 208 45.7
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.2e-35 153.3 211 45.0
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 2.9e-35 152.9 213 46.0
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 5.0e-35 152.1 213 45.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.1e-34 151.0 208 46.6
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.1e-34 151.0 220 41.8
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.9e-34 150.2 215 45.1
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 3.2e-34 149.4 212 42.5
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.2e-34 149.4 213 44.6
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.2e-34 149.1 222 43.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 4.2e-34 149.1 213 44.1
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 4.2e-34 149.1 213 44.1
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 7.2e-34 148.3 190 48.9
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.7e-33 146.4 211 44.1
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 3.6e-33 146.0 214 43.5
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 8.0e-33 144.8 215 41.4
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.8e-32 143.7 213 44.1
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 2.3e-32 143.3 218 41.7
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.0e-32 142.9 212 42.9
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.0e-32 142.9 163 50.9
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 8.8e-32 141.4 209 43.5
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 8.8e-32 141.4 203 42.9
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.2e-31 141.0 213 45.1
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.2e-31 141.0 215 41.9
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 5.7e-31 138.7 215 41.4
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 7.5e-31 138.3 213 43.2
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 9.8e-31 137.9 213 40.4
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 9.8e-31 137.9 213 44.6
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 9.8e-31 137.9 211 41.2
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 4.8e-30 135.6 205 42.9
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.8e-29 133.7 218 38.5
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 7.0e-29 131.7 221 38.5
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 4.5e-28 129.0 215 39.1
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 5.9e-28 128.6 207 39.6
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.7e-28 128.3 138 52.9
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.3e-27 127.5 148 53.4
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 1.3e-27 127.5 202 40.6
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 5.0e-27 125.6 215 38.6
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.5e-27 124.8 214 38.3
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.5e-26 123.2 214 37.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.2e-26 122.9 203 39.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 3.2e-26 122.9 217 38.7
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.5e-26 122.1 137 51.1
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.6e-25 120.6 213 39.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 2.0e-23 113.6 215 39.5
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.0e-23 113.6 207 39.6
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 2.6e-23 113.2 208 36.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 5.7e-23 112.1 115 57.4
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 2.8e-22 109.8 216 36.6
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.8e-22 109.8 222 35.6
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 6.3e-22 108.6 139 45.3
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.4e-21 107.5 196 36.7
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.4e-21 107.5 216 36.1
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.4e-21 107.5 198 37.9
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 3.1e-21 106.3 195 36.9
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 7.0e-21 105.1 198 36.9
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.0e-20 103.6 215 39.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 2.7e-20 103.2 174 37.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 3.5e-20 102.8 217 34.1
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 5.9e-20 102.1 200 35.5
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.3e-19 100.9 198 35.9
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.3e-19 100.9 198 35.9
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.3e-19 100.1 167 37.7
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.5e-18 97.4 210 36.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.5e-18 96.7 192 35.9
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 7.2e-18 95.1 139 40.3
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.6e-17 94.0 196 34.7
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 6.1e-17 92.0 145 40.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.5e-15 87.4 139 40.3
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-12 77.8 120 40.8
VMungo1309G0581 Vigna mungo HOM05D004648 ORTHO05D005782 5.6e-10 68.9 47 72.3
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 1.8e-08 63.9 102 43.1
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 3.7e-06 56.2 99 37.4


User provided reference genes

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