Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-175 619.4 316 100.0
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 7.7e-143 510.8 318 83.3
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.2e-122 443.7 320 74.7
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 7.8e-103 377.9 271 73.1
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 4.3e-93 345.5 318 60.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.7e-89 333.6 319 60.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-88 330.9 319 60.2
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.3e-85 319.3 304 60.2
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.1e-83 312.8 322 55.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 7.6e-82 308.1 316 56.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.2e-80 302.4 325 53.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 9.3e-80 301.2 322 55.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.2e-79 300.8 325 54.5
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.6e-79 300.4 325 54.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.5e-79 299.3 321 55.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.7e-78 294.7 323 54.5
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.5e-77 293.1 323 54.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.5e-77 293.1 324 53.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.3e-77 292.7 323 54.5
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.6e-77 292.0 322 53.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.3e-77 291.6 325 52.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-76 290.0 325 52.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-75 287.0 323 51.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.4e-75 286.6 325 50.2
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.1e-75 286.2 340 50.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 9.0e-75 284.6 320 54.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.2e-74 284.3 324 50.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.2e-74 284.3 324 52.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.5e-74 283.9 368 48.1
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-73 280.4 323 50.5
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.7e-73 280.4 323 50.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 3.8e-73 279.3 324 53.1
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 6.4e-73 278.5 323 53.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-72 277.7 325 51.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.4e-72 277.3 324 52.5
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.2e-72 275.8 323 53.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.4e-72 275.4 326 50.0
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-72 275.4 323 53.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.1e-72 275.0 324 52.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-71 274.2 324 52.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-71 274.2 323 49.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.2e-71 274.2 306 52.9
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.6e-71 273.9 322 52.2
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.7e-71 273.1 324 50.3
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.7e-71 273.1 324 50.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.0e-70 271.2 316 50.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.3e-70 270.8 324 52.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.5e-69 267.3 325 48.6
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.5e-69 267.3 324 50.9
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.3e-69 265.8 315 50.8
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.8e-68 263.1 329 50.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.7e-68 262.7 330 48.5
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-67 260.4 329 50.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.4e-67 260.0 375 45.6
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 6.9e-67 258.5 324 48.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 9.0e-67 258.1 327 48.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.8e-66 255.4 322 50.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.3e-65 254.2 323 50.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.7e-65 253.8 322 47.5
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 4.9e-65 252.3 324 48.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 8.4e-65 251.5 323 46.7
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.1e-64 251.1 324 45.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.5e-64 250.0 324 48.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.1e-64 248.4 302 51.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 9.3e-64 248.1 322 47.5
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-63 247.7 324 47.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.6e-63 247.3 323 45.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.1e-63 246.9 325 46.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.5e-63 246.1 288 52.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.6e-63 245.7 324 46.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.6e-63 245.7 324 47.2
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.1e-61 241.1 328 46.0
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.9e-61 240.4 384 40.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.6e-61 238.0 325 44.6
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.6e-60 237.3 324 47.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.7e-60 236.1 325 46.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 4.8e-60 235.7 324 46.6
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 6.2e-60 235.3 319 45.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 8.2e-60 235.0 395 42.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.8e-59 233.8 384 39.3
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 4.1e-59 232.6 321 44.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 5.3e-59 232.3 323 45.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-58 231.1 321 45.2
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.8e-57 226.1 320 44.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.2e-56 222.6 319 44.8
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 7.1e-56 221.9 323 44.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.6e-55 219.2 324 44.4
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.6e-55 219.2 324 44.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.0e-54 218.0 323 42.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-54 217.2 326 42.3
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-53 213.8 322 42.9
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 5.7e-53 212.2 286 44.4
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.7e-52 209.5 322 43.5
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.8e-51 207.2 330 43.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.4e-51 206.8 322 41.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 4.1e-51 206.1 380 38.4
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.3e-51 205.7 323 42.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.2e-50 204.5 326 42.6
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 4.5e-50 202.6 320 41.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.2e-49 200.3 331 41.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.2e-49 200.3 320 41.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.2e-48 196.1 319 41.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 7.2e-48 195.3 335 39.1
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.6e-47 192.6 353 37.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.1e-46 189.1 319 41.1
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.0e-45 187.2 297 43.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.7e-45 185.7 257 46.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 7.4e-45 185.3 297 43.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-44 184.5 286 43.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.7e-44 184.1 307 42.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.7e-44 184.1 256 46.1
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.8e-44 183.3 323 39.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 6.3e-44 182.2 323 39.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 6.3e-44 182.2 286 42.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.8e-43 180.6 318 39.9
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.4e-43 180.3 259 45.2
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.9e-43 178.7 286 42.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 6.9e-43 178.7 193 54.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-42 177.2 321 39.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.7e-42 175.3 305 39.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.3e-41 174.5 307 40.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.3e-41 174.5 353 36.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.7e-41 174.1 381 34.6
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-41 172.9 286 41.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.5e-41 172.2 296 38.2
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 8.5e-41 171.8 320 39.1
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.9e-40 170.6 263 40.3
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 4.2e-40 169.5 289 40.5
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.1e-39 167.2 260 40.8
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 6.3e-36 155.6 315 36.8
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 6.3e-36 155.6 315 36.8
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 5.0e-33 146.0 321 37.1
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-32 144.4 273 38.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.5e-32 143.7 317 33.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 9.4e-32 141.7 207 37.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-31 141.4 322 31.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.7e-31 139.4 148 50.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-29 134.8 175 48.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-29 134.4 146 52.1
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.4e-29 132.9 271 37.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.2e-28 130.6 217 43.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.4e-27 127.1 221 40.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.1e-27 126.3 153 44.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-26 124.4 153 43.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-26 123.6 170 45.3
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.5e-26 122.9 161 47.2
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.0e-25 121.7 258 37.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-25 120.9 285 33.3
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.0e-25 119.4 311 31.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 5.0e-25 119.4 320 32.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-24 117.9 151 48.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-24 117.1 130 50.8
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.2e-24 116.7 264 36.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-23 113.2 128 57.0
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.0e-23 112.1 355 25.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.0e-22 110.2 139 43.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-21 108.2 129 55.8
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.3e-20 104.8 148 38.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.8e-20 103.6 107 57.9
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.0e-17 95.1 183 38.3
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.0e-17 95.1 183 38.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.2e-17 94.0 194 37.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.9e-17 93.6 81 56.8
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-16 91.7 196 37.8
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-14 84.3 96 56.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.0e-14 83.2 232 32.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.2e-13 81.6 318 26.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 9.8e-13 78.6 84 48.8
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.2e-12 77.4 233 32.2
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.9e-12 76.3 257 27.6
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 9.1e-11 72.0 102 39.2
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 4.5e-10 69.7 218 31.2
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 4.5e-10 69.7 218 31.2
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.7e-10 68.9 48 70.8
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-07 61.6 91 50.5
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 2.8e-07 60.5 103 45.6
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-06 58.5 198 30.3
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.3e-06 57.4 92 41.3
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.8e-06 55.8 47 55.3


User provided reference genes

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