Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.1e-45 185.3 91 100.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.6e-29 132.5 89 70.8
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.1e-28 129.8 87 73.6
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.3e-23 112.1 87 65.5
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.3e-23 112.1 88 63.6
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 3.0e-23 111.7 88 60.2
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.5e-22 108.6 87 65.5
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 7.4e-22 107.1 86 60.5
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 2.2e-21 105.5 91 60.4
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.8e-20 102.4 86 59.3
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.8e-20 102.4 86 58.1
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 4.1e-20 101.3 87 59.8
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.5e-19 99.4 87 56.3
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.6e-19 98.6 88 58.0
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 3.4e-19 98.2 86 60.5
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 5.9e-19 97.4 86 59.3
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-18 96.7 87 52.9
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.0e-18 96.7 89 56.2
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.3e-18 96.3 87 54.0
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.3e-18 96.3 89 56.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 5.5e-17 90.9 85 56.5
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.9e-15 84.7 80 57.5
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 5.1e-15 84.3 77 57.1
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 6.7e-15 84.0 77 57.1
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 6.7e-15 84.0 94 52.1
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.3e-14 81.3 84 54.8
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 2.8e-13 78.6 80 53.8
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 3.7e-13 78.2 75 57.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 3.1e-12 75.1 76 53.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 4.1e-12 74.7 73 50.7
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 6.9e-12 73.9 92 46.7
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.2e-11 73.2 83 43.4
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.2e-11 73.2 83 43.4
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.5e-11 72.8 83 42.2
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 2.0e-11 72.4 83 43.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 2.6e-11 72.0 76 51.3
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.4e-11 71.6 81 50.6
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 4.5e-11 71.2 83 50.6
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.7e-11 70.5 83 41.0
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.0e-10 70.1 84 46.4
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.7e-10 69.3 78 46.2
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.2e-10 68.9 93 43.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 2.9e-10 68.6 73 50.7
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.9e-10 68.6 78 53.8
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.9e-10 68.6 79 48.1
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.8e-10 68.2 95 37.9
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.1e-09 66.6 80 50.0
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 1.1e-09 66.6 78 42.3
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.4e-09 66.2 64 54.7
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 1.4e-09 66.2 80 37.5
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.4e-09 66.2 87 40.2
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 1.4e-09 66.2 80 46.2
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.9e-09 65.9 77 45.5
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.9e-09 65.9 80 38.8
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.9e-09 65.9 73 52.1
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.2e-09 65.1 83 39.8
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.2e-09 65.1 87 39.1
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 4.2e-09 64.7 94 37.2
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 4.2e-09 64.7 58 44.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 5.5e-09 64.3 102 40.2
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 7.2e-09 63.9 80 40.0
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 7.2e-09 63.9 86 43.0
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 7.2e-09 63.9 77 42.9
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 9.4e-09 63.5 98 41.8
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 9.4e-09 63.5 98 41.8
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 9.4e-09 63.5 96 38.5
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 9.4e-09 63.5 83 50.6
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.2e-08 63.2 80 42.5
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 1.6e-08 62.8 92 40.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.6e-08 62.8 87 37.9
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 2.1e-08 62.4 82 48.8
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.1e-08 62.4 98 39.8
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.7e-08 62.0 79 43.0
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.6e-08 61.6 79 44.3
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.7e-08 61.2 74 41.9
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.7e-08 61.2 74 41.9
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.7e-08 61.2 79 40.5
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 6.1e-08 60.8 79 40.5
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.1e-08 60.8 76 40.8
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 6.1e-08 60.8 77 42.9
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 7.9e-08 60.5 81 42.0
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.0e-07 60.1 82 39.0
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.0e-07 60.1 74 40.5
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.0e-07 60.1 57 49.1
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.0e-07 60.1 97 38.1
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 1.8e-07 59.3 67 44.8
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.8e-07 59.3 76 40.8
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.8e-07 59.3 72 41.7
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 2.3e-07 58.9 88 40.9
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.3e-07 58.9 84 38.1
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.3e-07 58.9 87 37.9
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.0e-07 58.5 102 34.3
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 6.7e-07 57.4 78 37.2
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 1.5e-06 56.2 82 37.8
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.5e-06 56.2 79 38.0
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 2.0e-06 55.8 75 41.3
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.6e-06 55.5 100 34.0
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.6e-06 55.5 78 39.7
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.6e-06 55.5 82 39.0
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 4.4e-06 54.7 66 42.4
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 5.7e-06 54.3 71 43.7
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 7.4e-06 53.9 62 40.3
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 9.7e-06 53.5 70 44.3
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 9.7e-06 53.5 70 44.3
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 9.7e-06 53.5 70 44.3
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 9.7e-06 53.5 70 44.3
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 9.7e-06 53.5 70 44.3
Cfa007851 Carpinus fangiana HOM05D033200 ORTHO05D022252 9.7e-06 53.5 69 47.8
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 9.7e-06 53.5 106 36.8
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 9.7e-06 53.5 79 36.7


User provided reference genes

Program Settings