Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 4.5e-132 474.6 234 100.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.8e-113 412.1 235 86.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.7e-110 402.9 216 90.3
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.3e-104 382.5 234 81.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.5e-95 353.2 235 71.9
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.5e-95 353.2 235 71.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.1e-90 337.0 229 70.7
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 3.4e-87 325.5 234 66.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.5e-82 310.1 229 65.5
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.5e-82 309.3 229 65.1
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 5.6e-82 308.1 230 63.9
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.8e-81 305.8 217 67.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.7e-78 296.6 230 62.6
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.1e-77 291.2 233 60.5
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.2e-76 290.4 229 60.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.1e-76 289.7 221 62.4
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.0e-75 285.8 216 64.4
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.0e-75 285.8 221 58.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 6.7e-75 284.6 229 56.8
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 2.5e-74 282.7 216 57.4
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.5e-74 282.7 205 62.4
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.5e-74 282.7 221 58.4
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.3e-74 282.3 216 63.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 7.4e-74 281.2 227 59.5
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-73 280.4 232 61.2
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.3e-73 280.4 235 57.9
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.3e-73 280.4 221 60.6
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-73 279.6 220 63.2
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.1e-73 279.6 194 67.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 6.2e-73 278.1 209 60.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-72 277.3 220 62.7
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.4e-72 276.9 225 60.4
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.8e-72 276.6 219 58.0
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 6.9e-72 274.6 221 61.5
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 9.0e-72 274.2 220 58.6
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.5e-71 273.5 232 56.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 2.0e-71 273.1 199 61.3
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.0e-71 273.1 218 61.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-71 272.7 220 62.3
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 3.4e-71 272.3 210 61.4
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 4.5e-71 271.9 222 58.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 7.6e-71 271.2 207 59.9
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 7.6e-71 271.2 216 58.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 9.9e-71 270.8 199 61.3
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.7e-70 270.0 223 61.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.1e-69 267.3 205 62.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.1e-69 267.3 207 60.4
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-69 266.9 220 62.3
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.9e-69 266.5 193 62.2
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.9e-69 266.5 203 63.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-69 266.5 222 58.6
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.4e-69 266.2 205 60.5
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-69 265.4 220 61.8
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.2e-69 265.4 190 64.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.2e-69 265.4 235 55.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.1e-69 264.6 193 61.7
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.3e-69 264.2 220 58.2
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.2e-68 263.8 231 55.4
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.2e-68 263.8 218 58.7
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.5e-68 262.3 204 60.8
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.0e-68 261.5 235 53.6
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.0e-68 261.5 216 58.3
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.0e-68 261.5 204 60.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 7.9e-68 261.2 220 60.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.9e-68 261.2 191 62.3
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-67 260.4 235 53.6
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.8e-67 260.0 222 57.7
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 8.7e-67 257.7 190 63.2
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.7e-67 257.7 202 61.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 8.7e-67 257.7 199 62.3
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-66 256.9 220 59.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-66 256.9 220 59.5
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.9e-66 256.5 217 57.1
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-66 256.5 213 56.3
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-66 256.5 213 56.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.5e-66 256.1 207 58.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.5e-66 256.1 217 59.4
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.5e-66 256.1 220 58.2
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.5e-66 256.1 191 59.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.5e-66 256.1 191 59.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.3e-66 255.8 207 58.0
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 4.3e-66 255.4 182 63.2
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 4.3e-66 255.4 232 56.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.6e-66 255.0 212 58.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.6e-66 254.2 222 53.6
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.6e-65 253.4 201 60.2
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.6e-65 253.4 207 57.0
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 2.1e-65 253.1 221 53.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.8e-65 252.7 198 61.1
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 4.8e-65 251.9 219 56.6
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 4.8e-65 251.9 194 59.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.1e-64 250.8 190 60.5
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.8e-64 250.0 203 57.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 2.4e-64 249.6 225 53.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.4e-64 249.6 223 55.2
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 5.3e-64 248.4 238 55.5
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.3e-64 248.4 200 60.5
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.0e-64 247.7 250 52.0
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-63 247.3 225 52.9
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.2e-63 247.3 216 55.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.0e-63 246.5 225 54.2
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.0e-63 246.5 209 57.4
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.0e-63 246.5 211 56.4
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.6e-63 246.1 205 57.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.4e-63 245.7 203 55.7
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 4.5e-63 245.4 239 54.8
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 5.8e-63 245.0 225 52.4
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.0e-62 244.2 225 52.9
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.9e-62 242.7 203 55.7
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-62 242.3 220 53.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.8e-62 242.3 208 55.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 4.9e-62 241.9 197 56.3
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.9e-62 241.9 226 52.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 4.9e-62 241.9 188 59.0
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 6.5e-62 241.5 216 53.7
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-61 240.4 212 54.7
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-61 240.4 212 54.2
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.5e-61 239.6 225 52.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.5e-61 239.6 214 53.7
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 9.3e-61 237.7 194 56.7
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.6e-60 235.3 225 49.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.9e-58 229.9 222 52.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.3e-58 228.8 222 51.4
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.3e-57 227.3 235 48.5
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.7e-57 225.7 211 53.1
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.4e-56 223.8 201 51.2
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.8e-56 223.4 189 54.5
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.4e-56 223.0 193 56.5
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-55 220.7 189 54.0
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-54 217.2 193 54.9
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.2e-53 212.2 198 49.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.2e-53 211.5 205 49.3
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.7e-52 209.5 174 56.3
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 4.6e-52 208.8 216 46.8
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 4.6e-52 208.8 233 47.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.1e-50 204.1 216 48.1
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 4.3e-50 202.2 139 69.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.4e-48 197.2 157 66.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 9.1e-48 194.5 222 42.8
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 4.5e-47 192.2 203 49.8
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.7e-46 190.3 149 59.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.5e-46 188.3 165 54.5
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.5e-46 188.3 204 48.0
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.7e-44 183.0 221 41.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.0e-43 179.5 219 45.7
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 5.1e-43 178.7 127 64.6
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.7e-43 178.3 211 47.9
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.5e-42 177.2 146 58.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.2e-36 157.5 219 37.0
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.4e-35 154.1 119 65.5
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.1e-34 151.0 218 40.4
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 7.4e-34 148.3 113 61.1
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.7e-33 146.0 108 63.9
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.3e-33 145.2 174 43.7
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.3e-32 142.1 116 57.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 8.5e-30 134.8 107 58.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.5e-30 134.8 97 66.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.5e-29 133.3 134 48.5
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 4.2e-29 132.5 114 59.6
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.8e-27 124.8 163 42.3
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 4.4e-26 122.5 95 63.2
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 9.7e-26 121.3 125 45.6
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.7e-25 120.6 132 47.0
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 6.3e-25 118.6 110 50.9
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.1e-24 115.9 102 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 7.0e-24 115.2 149 39.6
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 5.9e-23 112.1 176 35.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-21 107.1 116 43.1
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 4.2e-21 105.9 91 50.5
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.5e-18 97.4 121 47.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.4e-18 95.9 88 48.9
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-16 90.1 100 41.0
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.4e-16 89.0 89 49.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.2e-15 87.8 63 58.7
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-14 83.6 92 41.3
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-13 80.9 59 61.0
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.4e-10 69.3 68 48.5


User provided reference genes

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