Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 9.7e-203 709.9 354 100.0
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.4e-169 599.0 403 75.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.4e-145 519.2 416 67.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.6e-123 446.0 415 57.3
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.3e-122 443.7 409 57.7
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.6e-117 426.8 413 54.7
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.4e-116 423.7 411 55.0
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 5.3e-116 421.8 415 54.7
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.8e-115 418.3 388 57.5
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 6.9e-108 394.8 412 54.1
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.6e-107 392.9 411 51.6
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.8e-106 389.0 412 53.4
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.4e-95 354.0 421 45.8
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.9e-95 352.4 419 47.3
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 9.7e-94 347.8 412 49.3
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.3e-93 347.4 422 46.0
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 6.9e-92 341.7 418 45.7
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.2e-91 340.9 419 44.6
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 5.5e-89 332.0 419 44.6
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.2e-88 330.9 417 44.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 7.9e-88 328.2 424 43.6
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.5e-86 323.9 390 45.4
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.5e-86 323.9 444 43.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.5e-86 323.9 419 43.2
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 9.7e-86 321.2 404 46.0
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 6.3e-85 318.5 416 43.0
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.8e-84 317.0 418 43.3
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 7.0e-84 315.1 420 42.6
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 2.2e-82 310.1 422 43.6
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.0e-82 308.9 406 41.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 6.5e-82 308.5 424 40.8
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.1e-81 307.8 417 42.9
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 4.2e-81 305.8 404 42.1
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 4.2e-81 305.8 406 41.4
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 5.5e-81 305.4 415 41.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 5.5e-81 305.4 404 42.6
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 5.5e-81 305.4 419 42.2
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 4.7e-80 302.4 403 42.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 6.1e-80 302.0 420 42.1
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.0e-79 301.2 383 44.6
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.4e-79 300.8 420 41.4
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.8e-79 300.4 387 45.5
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.7e-79 298.5 403 42.4
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.1e-78 297.7 426 41.3
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.1e-78 297.7 407 40.3
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.0e-78 297.0 385 43.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.6e-78 296.6 385 43.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-78 296.2 424 42.9
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 4.4e-78 295.8 419 41.3
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 7.4e-78 295.0 421 41.3
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 7.4e-78 295.0 418 40.9
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.3e-77 294.3 423 39.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.2e-77 293.5 417 40.8
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.2e-77 293.5 428 43.2
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-77 293.1 418 42.6
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 4.8e-77 292.4 431 42.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.8e-77 292.4 422 41.7
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 4.8e-77 292.4 418 40.0
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 8.2e-77 291.6 424 42.5
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 8.2e-77 291.6 417 40.8
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.4e-76 290.8 385 42.9
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.4e-76 290.8 405 41.5
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.4e-76 290.8 407 41.0
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.8e-76 290.4 420 40.5
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 9.1e-76 288.1 410 39.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.2e-75 287.7 385 42.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.2e-75 287.7 407 40.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-75 287.7 405 41.2
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.6e-75 287.3 389 40.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 3.5e-75 286.2 423 41.1
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 4.5e-75 285.8 426 40.8
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 5.9e-75 285.4 416 38.7
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 7.7e-75 285.0 422 39.8
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.9e-74 283.1 422 40.3
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.9e-74 283.1 417 40.0
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.8e-74 282.7 421 40.1
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 5.0e-74 282.3 403 40.0
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.1e-73 281.2 421 40.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.5e-73 280.0 419 39.9
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 3.0e-71 273.1 427 38.9
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.2e-71 272.3 373 40.5
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.7e-71 271.9 421 38.7
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.7e-71 271.9 397 42.8
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 8.8e-71 271.6 403 39.2
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.5e-70 270.8 397 41.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 5.7e-70 268.9 375 41.3
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 5.7e-70 268.9 327 44.6
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.2e-69 266.9 423 37.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.2e-69 266.9 405 38.8
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.8e-69 266.5 457 35.4
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.1e-68 264.6 359 39.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.4e-68 263.5 456 37.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.0e-67 260.4 419 41.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.7e-67 260.0 459 37.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-66 257.3 416 40.6
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.7e-66 257.3 395 40.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.9e-66 256.5 419 38.9
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.9e-65 253.8 397 39.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 9.4e-65 251.5 393 36.1
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 8.8e-63 245.0 405 39.0
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.6e-62 243.4 407 39.6
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.4e-60 237.7 429 36.6
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 3.5e-59 233.0 381 37.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.5e-57 226.9 410 35.1
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-54 217.6 233 51.1
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.4e-52 211.1 358 36.6
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.0e-52 208.8 205 51.7
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 7.0e-52 208.8 334 38.0
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 3.3e-49 199.9 234 49.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 4.7e-48 196.1 424 32.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.8e-47 192.2 420 31.7
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 4.9e-45 186.0 359 34.5
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.1e-44 184.9 373 30.8
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.7e-43 180.3 358 33.8
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.6e-40 171.0 156 54.5
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 8.0e-40 168.7 342 31.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.8e-39 167.5 194 48.5
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.0e-34 151.8 305 32.8
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.5e-27 126.7 358 26.8
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 4.6e-27 126.3 304 29.3
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-22 111.3 88 63.6
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.3e-21 108.2 202 34.2
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.9e-20 104.4 177 37.9
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.9e-20 104.4 207 32.9
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.2e-20 103.6 108 45.4
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 5.4e-20 102.8 430 24.4
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 7.1e-20 102.4 236 30.1
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 7.8e-19 99.0 237 29.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.0e-18 98.6 206 32.0
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 6.6e-18 95.9 205 30.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.9e-17 94.4 184 32.1
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.5e-17 94.0 208 30.8
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 2.1e-16 90.9 76 57.9
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.4e-15 87.4 209 30.6
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-14 85.1 231 31.2
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 3.2e-12 77.0 52 61.5
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 3.2e-12 77.0 63 58.7
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.3e-09 67.0 59 57.6
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 9.6e-09 65.5 92 44.6


User provided reference genes

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