Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 0.0e+00 1364.4 696 100.0
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 1.2e-310 1069.3 716 81.3
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 6.0e-265 917.5 709 73.6
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 1.1e-258 896.7 704 73.3
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 1.8e-176 623.6 714 56.9
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 2.4e-165 586.6 650 56.0
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 9.2e-165 584.7 670 55.5
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 1.7e-163 580.5 658 54.7
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 2.0e-151 540.4 659 53.1
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 2.9e-150 536.6 656 54.0
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 2.1e-145 520.4 650 52.5
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 9.3e-141 505.0 627 52.5
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 3.3e-138 496.5 640 52.7
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 5.8e-135 485.7 601 53.2
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 1.3e-131 474.6 637 50.1
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 3.9e-131 473.0 695 48.6
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 3.7e-129 466.5 695 48.1
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 5.1e-123 446.0 645 48.7
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 7.4e-122 442.2 617 48.0
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 1.7e-105 387.9 621 46.1
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 2.6e-103 380.6 668 43.1
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 7.7e-103 379.0 568 46.8
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 1.0e-83 315.5 718 36.8
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 6.8e-83 312.8 732 37.0
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 1.8e-80 304.7 741 37.0
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 2.7e-79 300.8 722 34.3
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 3.1e-75 287.3 640 37.2
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 5.6e-69 266.5 736 34.8
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.6e-68 265.0 669 35.4
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 3.6e-68 263.8 734 34.3
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 8.9e-67 259.2 743 33.2
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 5.4e-64 250.0 718 32.7
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 2.7e-63 247.7 714 32.8
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.7e-62 245.0 660 36.1
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 1.5e-61 241.9 787 31.6
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 3.3e-61 240.7 653 36.1
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 9.5e-61 239.2 673 36.0
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 2.8e-60 237.7 685 32.7
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 1.4e-59 235.3 638 33.9
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 4.0e-59 233.8 692 34.8
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 5.2e-59 233.4 626 35.0
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 6.8e-59 233.0 667 33.6
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 3.4e-58 230.7 764 31.2
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 3.4e-58 230.7 681 33.6
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 9.9e-58 229.2 651 33.5
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 9.9e-58 229.2 713 33.7
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 1.7e-57 228.4 735 30.9
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 3.2e-56 224.2 671 33.5
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 3.5e-55 220.7 667 33.1
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 7.8e-55 219.5 659 33.7
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.5e-53 215.3 750 32.3
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 3.3e-53 214.2 731 31.5
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 2.1e-52 211.5 667 33.7
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 2.6e-50 204.5 600 33.0
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 1.7e-49 201.8 704 31.8
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 2.2e-49 201.4 748 31.8
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 2.2e-49 201.4 710 32.7
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 3.8e-49 200.7 621 31.4
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 4.0e-43 180.6 672 30.4
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 6.0e-39 166.8 560 35.2
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 6.0e-39 166.8 662 29.6
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 7.9e-39 166.4 650 29.5
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 1.1e-37 162.5 682 30.9
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 2.8e-36 157.9 531 31.3
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 1.1e-35 156.0 386 34.5
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 1.1e-35 156.0 707 29.6
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 7.6e-34 149.8 694 28.8
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 1.2e-31 142.5 670 27.8
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 2.7e-31 141.4 534 30.5
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 5.1e-30 137.1 689 27.6
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 1.5e-29 135.6 599 30.7
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 4.3e-29 134.0 625 29.8
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 7.4e-29 133.3 615 28.5
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 1.3e-28 132.5 607 28.5
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 1.1e-27 129.4 607 29.7
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 5.3e-27 127.1 701 27.1
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 6.9e-27 126.7 623 28.9
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 4.2e-24 117.5 687 26.6
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 9.3e-24 116.3 354 30.2
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 2.7e-23 114.8 732 26.1
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 3.5e-23 114.4 539 27.1
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 3.9e-22 110.9 645 26.5
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 1.3e-20 105.9 259 36.3
TPR.G35411 Trifolium pratense HOM05D000001 ORTHO05D000003 1.3e-20 105.9 104 57.7
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 6.2e-20 103.6 286 36.7
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 3.1e-19 101.3 525 27.8
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.0e-17 96.3 264 36.7
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 1.0e-17 96.3 689 26.3
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 2.2e-17 95.1 139 44.6
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 8.4e-17 93.2 363 29.2
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 3.2e-16 91.3 705 24.8
AUR62035752 Chenopodium quinoa HOM05D007378 ORTHO05D007577 1.6e-15 89.0 630 24.0
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 6.1e-15 87.0 499 28.1
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 3.0e-14 84.7 586 25.4
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 3.9e-14 84.3 345 30.7
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 8.7e-14 83.2 247 31.2
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 1.1e-13 82.8 590 23.6
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 7.4e-13 80.1 592 24.8
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 9.7e-13 79.7 442 26.9
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 4.1e-11 74.3 546 26.4
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 5.3e-11 73.9 632 24.7
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 1.2e-10 72.8 135 41.5
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 7.7e-10 70.1 123 41.5
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 2.9e-09 68.2 348 27.0
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 1.4e-08 65.9 378 25.9
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.9e-08 65.5 378 25.9
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 1.9e-08 65.5 165 37.0
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 5.5e-08 63.9 108 42.6
TPR.G31885 Trifolium pratense HOM05D001130 ORTHO05D013423 2.3e-06 58.5 101 40.6
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 3.0e-06 58.2 194 32.5
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 5.1e-06 57.4 383 25.3


User provided reference genes

Program Settings