Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 6.0e-247 857.1 433 100.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 2.9e-217 758.4 438 88.6
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 7.2e-216 753.8 438 88.6
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 5.9e-202 707.6 390 91.3
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.6e-199 699.5 434 81.3
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.8e-198 696.0 437 81.7
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 6.3e-196 687.6 427 80.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.6e-191 672.9 438 78.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.3e-190 669.1 437 78.3
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.7e-190 667.5 431 78.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 5.0e-185 651.4 429 75.5
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 8.5e-185 650.6 436 76.1
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.5e-184 649.0 442 77.1
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 9.4e-184 647.1 425 76.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.2e-183 646.7 426 75.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.6e-183 645.2 442 76.9
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.7e-183 644.8 426 75.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.0e-182 641.7 426 74.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 6.8e-182 641.0 431 74.7
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 9.8e-181 637.1 431 73.8
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.2e-180 636.0 426 74.6
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.7e-180 635.2 429 75.5
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 6.3e-180 634.4 405 76.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.1e-179 632.1 433 74.1
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.4e-179 631.3 428 73.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 7.0e-179 630.9 400 77.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 9.1e-179 630.6 431 73.8
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.6e-178 629.8 428 73.6
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.5e-178 628.2 430 73.5
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.7e-178 627.5 440 72.3
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.0e-177 627.1 425 75.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.3e-177 626.7 426 72.8
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.3e-177 625.9 438 74.0
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 8.6e-177 624.0 426 72.3
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.3e-176 622.1 425 72.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 9.5e-176 620.5 426 72.3
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 6.1e-175 617.8 418 73.9
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.2e-174 614.8 434 74.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.2e-174 614.8 427 71.7
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 6.8e-174 614.4 438 72.1
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 6.8e-174 614.4 419 73.3
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.2e-173 613.6 428 71.0
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 2.6e-173 612.5 434 71.9
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 3.4e-173 612.1 414 72.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 9.8e-173 610.5 406 72.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.2e-172 609.4 421 71.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.1e-171 605.5 433 70.4
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 7.0e-171 604.4 427 70.3
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 9.2e-171 604.0 401 74.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.6e-170 603.2 421 71.5
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.3e-169 600.1 399 75.2
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.5e-168 595.9 438 70.1
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.3e-168 595.1 398 73.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.2e-167 593.6 424 69.1
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.8e-167 592.4 434 69.8
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.6e-167 592.0 434 69.6
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 6.1e-167 591.3 414 71.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.1e-167 591.3 338 84.3
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.0e-167 590.9 410 69.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.3e-166 589.3 433 70.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.3e-166 589.3 405 70.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 3.1e-166 589.0 422 69.4
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 4.0e-166 588.6 417 70.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 4.0e-166 588.6 410 71.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 5.2e-166 588.2 416 70.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 5.2e-166 588.2 416 70.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 6.8e-166 587.8 417 70.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-165 586.3 478 64.9
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 3.4e-165 585.5 431 68.2
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 4.4e-165 585.1 421 70.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 7.5e-165 584.3 434 67.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.7e-164 583.2 421 69.8
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 4.9e-164 581.6 432 70.4
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 6.4e-164 581.3 401 72.6
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.3e-164 580.9 401 70.6
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.2e-162 577.0 438 66.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 3.5e-162 575.5 401 69.8
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 4.6e-162 575.1 411 69.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 6.0e-162 574.7 435 65.5
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.0e-161 573.9 410 68.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.0e-161 572.4 422 68.5
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.1e-160 570.5 469 62.5
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 9.5e-160 567.4 386 71.5
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.6e-159 566.6 407 68.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 6.2e-159 564.7 418 67.0
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.4e-158 563.5 399 68.7
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 5.2e-158 561.6 394 70.8
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.4e-157 558.9 458 63.5
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 3.4e-157 558.9 395 71.1
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 8.3e-156 554.3 388 69.6
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 8.3e-156 554.3 372 71.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.1e-155 552.0 461 62.3
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.0e-153 545.8 422 65.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.6e-151 540.0 421 63.2
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 5.4e-147 525.0 410 65.6
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 5.6e-144 515.0 382 67.3
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.9e-140 502.7 317 76.3
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.8e-140 502.3 350 71.1
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.8e-140 502.3 416 60.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 4.9e-140 501.9 402 62.4
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 6.0e-138 495.0 398 64.6
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.7e-137 493.4 422 59.2
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 9.6e-136 487.6 301 77.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.4e-134 483.8 395 59.5
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 4.0e-134 482.3 390 60.8
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 9.3e-131 471.1 395 59.2
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 4.6e-130 468.8 385 60.0
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.9e-128 463.4 318 67.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.3e-128 462.6 385 60.8
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.1e-127 459.9 325 68.9
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.8e-127 458.8 318 66.7
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 6.2e-127 458.4 442 54.8
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.6e-125 453.0 344 62.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.7e-122 443.0 281 77.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.5e-117 427.2 283 77.4
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 3.4e-109 399.4 280 72.9
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.7e-103 379.4 314 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 5.9e-101 372.1 349 54.2
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 3.4e-93 346.3 277 61.0
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.9e-91 340.5 401 44.1
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.2e-91 339.7 219 71.2
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 8.0e-74 282.0 233 63.1
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 8.8e-73 278.5 318 43.4
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 9.8e-72 275.0 230 64.8
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 4.8e-71 272.7 203 65.5
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.2e-68 263.8 239 52.7
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.2e-67 258.8 195 63.6
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.6e-64 250.4 167 73.1
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.7e-53 213.8 145 71.7
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.6e-45 188.0 169 60.9
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-40 169.9 114 64.0
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.5e-40 169.1 117 58.1
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.3e-35 153.7 150 56.7
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.2e-34 151.8 135 48.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 6.8e-33 146.0 179 43.6
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.7e-29 134.0 131 58.0
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.7e-29 134.0 122 60.7
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.1e-27 128.6 388 27.8
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.8e-26 124.0 295 30.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 8.4e-23 112.5 83 72.3
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 6.6e-20 102.8 63 68.3
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 6.9e-17 92.8 52 82.7
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-15 88.2 58 70.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.0e-09 67.0 64 48.4
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.0e-09 67.0 64 48.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.2e-07 61.2 75 44.0


User provided reference genes

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