Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 5.2e-47 190.7 93 100.0
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 2.9e-42 174.9 94 92.6
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 4.3e-41 171.0 94 90.4
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.5e-38 162.5 93 83.9
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.9e-36 155.6 93 81.7
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 9.2e-36 153.3 94 79.8
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 3.5e-35 151.4 93 76.3
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.1e-33 146.4 93 81.7
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.5e-25 116.7 74 79.7
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 5.2e-23 110.9 93 57.0
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.0e-22 109.0 95 57.9
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 2.6e-22 108.6 85 69.4
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 2.6e-22 108.6 93 63.4
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 3.4e-22 108.2 103 58.3
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 4.4e-22 107.8 94 64.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 5.8e-22 107.5 93 60.2
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 2.9e-21 105.1 94 59.6
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 2.9e-21 105.1 94 59.6
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 7.1e-20 100.5 92 59.8
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 9.2e-20 100.1 94 56.4
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.2e-19 99.8 83 60.2
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 2.1e-19 99.0 93 55.9
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.6e-19 97.8 95 56.8
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 4.6e-19 97.8 75 65.3
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 6.0e-19 97.4 84 60.7
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 7.8e-19 97.1 95 57.9
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 7.8e-19 97.1 95 57.9
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 7.8e-19 97.1 95 57.9
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.3e-18 96.3 92 56.5
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 1.7e-18 95.9 93 54.8
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 2.3e-18 95.5 94 55.3
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.0e-18 95.1 95 56.8
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.0e-18 95.1 97 53.6
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.9e-18 94.7 87 58.6
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 6.6e-18 94.0 72 63.9
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 8.6e-18 93.6 83 59.0
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.5e-17 92.8 90 53.3
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.9e-17 92.4 97 49.5
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-17 91.7 95 57.9
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 3.3e-17 91.7 94 53.2
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 4.3e-17 91.3 74 63.5
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 7.3e-17 90.5 94 51.1
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.2e-16 89.7 97 48.5
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.2e-16 89.7 97 48.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 3.1e-15 85.1 94 54.3
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.8e-14 80.9 89 52.8
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.3e-13 79.7 89 57.3
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 2.2e-13 79.0 96 50.0
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 2.2e-13 79.0 80 56.2
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 3.8e-13 78.2 107 52.3
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 8.4e-13 77.0 85 56.5
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.1e-12 76.6 83 56.6
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.1e-12 76.6 57 66.7
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.9e-12 75.9 85 55.3
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.4e-12 75.5 90 48.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 7.1e-12 73.9 85 45.9
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.6e-11 72.8 70 58.6
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.6e-11 72.8 70 58.6
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 2.1e-11 72.4 65 58.5
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 1.7e-10 69.3 71 54.9
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 3.9e-10 68.2 94 47.9
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 5.1e-10 67.8 57 54.4
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 8.7e-10 67.0 106 36.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.5e-09 66.2 75 54.7
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.5e-09 65.5 101 39.6
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 4.3e-09 64.7 112 35.7
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 4.3e-09 64.7 112 35.7
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 5.6e-09 64.3 113 35.4
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 1.3e-08 63.2 112 34.8
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 1.3e-08 63.2 101 38.6
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 2.1e-08 62.4 114 34.2
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 4.8e-08 61.2 82 48.8
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 1.1e-07 60.1 72 48.6
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.8e-07 59.3 112 34.8
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 4.0e-07 58.2 99 36.4
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 4.0e-07 58.2 99 36.4
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 6.9e-07 57.4 74 41.9
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 9.0e-07 57.0 101 35.6
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 1.2e-06 56.6 99 35.4
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 1.5e-06 56.2 100 35.0
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 1.5e-06 56.2 100 35.0
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 1.5e-06 56.2 66 47.0
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.6e-06 55.5 82 45.1
CAN.G1759.7 Capsicum annuum HOM05D002019 ORTHO05D002150 9.9e-06 53.5 84 38.1
Cpa.g.sc25.25 Carica papaya HOM05D002019 ORTHO05D002150 9.9e-06 53.5 44 56.8
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 9.9e-06 53.5 51 49.0


User provided reference genes

Program Settings