Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 7.1e-62 240.4 116 100.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.1e-57 224.9 116 93.1
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 7.6e-56 220.3 116 90.5
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.2e-55 218.8 116 89.7
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.9e-55 218.4 116 88.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.5e-55 217.2 114 88.6
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 4.6e-53 211.1 116 86.2
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.6e-53 211.1 116 86.2
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 6.1e-53 210.7 116 86.2
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.5e-51 206.1 115 85.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.9e-51 205.7 114 86.8
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 84.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 5.7e-51 204.1 114 83.3
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 7.4e-51 203.8 114 84.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 9.7e-51 203.4 116 83.6
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.7e-51 203.4 114 84.2
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.3e-50 203.0 115 83.5
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.6e-50 202.6 116 82.8
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.6e-50 202.6 112 84.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.6e-50 202.6 115 81.7
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.2e-50 202.2 113 85.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.2e-50 202.2 114 81.6
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.8e-50 201.8 112 84.8
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.8e-50 201.8 112 84.8
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.8e-50 201.8 114 85.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 81.0
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 81.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 81.0
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.7e-50 201.4 115 83.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.7e-50 201.4 116 81.0
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.8e-50 201.1 115 81.7
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 6.3e-50 200.7 113 82.3
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 6.3e-50 200.7 114 82.5
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 6.3e-50 200.7 112 84.8
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.2e-50 200.3 115 81.7
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.2e-50 200.3 115 82.6
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.1e-49 199.9 114 83.3
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.1e-49 199.9 112 83.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 115 81.7
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 83.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-49 198.7 115 81.7
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-49 198.7 115 80.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.4e-49 198.7 115 80.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.4e-49 198.7 113 83.2
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 83.2
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 5.3e-49 197.6 113 82.3
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 81.4
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.5e-48 196.1 114 78.9
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.6e-48 195.3 116 80.2
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.6e-48 195.3 114 79.8
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.4e-48 194.9 115 80.9
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 5.9e-48 194.1 114 78.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 5.9e-48 194.1 114 79.8
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 5.9e-48 194.1 110 82.7
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 7.7e-48 193.7 109 82.6
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 81.2
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 80.5
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 77.9
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-47 192.2 113 79.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 2.9e-47 191.8 113 79.6
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.8e-47 191.4 107 81.3
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 3.8e-47 191.4 111 77.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 5.0e-47 191.0 111 77.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 8.5e-47 190.3 113 77.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.1e-46 189.9 114 78.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-46 189.9 117 77.8
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-46 189.9 108 79.6
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.4e-46 189.5 112 79.5
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-46 189.1 115 77.4
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.5e-46 188.7 113 78.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.2e-46 188.0 112 78.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.2e-46 188.0 114 78.1
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 5.5e-46 187.6 112 78.6
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 9.4e-46 186.8 180 55.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 78.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 78.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 78.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 78.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.2e-45 186.4 113 76.1
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.1e-45 185.7 114 75.4
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.1e-45 185.7 108 76.9
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.1e-45 185.7 135 68.1
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.7e-45 185.3 112 78.6
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.7e-45 185.3 112 77.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.7e-45 185.3 111 75.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.6e-45 184.9 112 78.6
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.6e-45 184.9 112 77.7
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.6e-45 184.5 112 77.7
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.6e-45 184.5 112 77.7
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 6.1e-45 184.1 114 78.1
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 7.9e-45 183.7 113 75.2
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 7.9e-45 183.7 112 77.7
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.0e-44 183.3 107 79.4
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.4e-44 183.0 111 75.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.4e-44 183.0 111 75.7
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 3.0e-44 181.8 112 75.9
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 3.0e-44 181.8 112 75.9
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 3.0e-44 181.8 112 75.9
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 3.0e-44 181.8 112 75.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 3.0e-44 181.8 112 75.9
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 5.1e-44 181.0 112 76.8
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.3e-43 177.9 112 75.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.7e-43 177.6 111 70.3
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 9.7e-43 176.8 114 74.6
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 9.7e-43 176.8 103 79.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 5.3e-41 171.0 102 77.5
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.3e-41 171.0 96 82.3
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.6e-40 168.7 96 82.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.7e-40 167.2 102 75.5
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.0e-39 166.8 147 59.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.7e-39 166.0 112 67.0
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.5e-38 162.2 103 70.9
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.2e-38 161.4 102 72.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.2e-38 161.4 103 70.9
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 7.2e-38 160.6 101 74.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 9.4e-38 160.2 106 68.9
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.7e-37 158.7 100 73.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.9e-36 154.8 101 70.3
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 5.1e-36 154.5 126 59.5
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-35 151.8 108 68.5
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.1e-33 146.7 87 80.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.1e-33 145.2 119 63.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.0e-32 142.5 112 61.6
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.7e-31 139.4 114 55.3
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.5e-30 135.6 111 56.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 4.7e-29 131.3 81 75.3
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 5.7e-27 124.4 116 50.0
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.7e-26 122.9 112 57.1
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.1e-25 118.2 60 86.7
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-23 113.2 110 47.3
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.5e-22 109.0 57 80.7
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.2e-21 106.7 60 81.7
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.1e-21 105.9 82 67.1
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.1e-21 105.9 58 79.3
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.0e-20 103.6 99 51.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 5.2e-20 101.3 103 49.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.7e-18 96.3 101 49.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.3e-18 94.0 96 47.9
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.2e-16 90.1 54 81.5
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-16 90.1 145 40.7
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.7e-16 89.0 56 76.8
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 7.7e-16 87.4 54 79.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 5.0e-15 84.7 113 41.6
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.2e-12 74.7 55 63.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.5e-11 73.2 54 68.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 3.7e-10 68.6 46 67.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 6.3e-10 67.8 99 35.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 8.3e-10 67.4 84 48.8


User provided reference genes

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