Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.4e-44 180.3 85 100.0
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.7e-41 172.2 85 92.9
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 2.3e-41 171.8 85 92.9
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 6.6e-41 170.2 85 92.9
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 6.6e-41 170.2 85 92.9
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-38 160.6 85 85.9
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 6.9e-38 160.2 79 92.4
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.5e-37 159.1 94 80.9
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.5e-37 159.1 79 91.1
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.0e-37 158.7 86 86.0
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.4e-37 157.9 85 87.1
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 3.4e-37 157.9 85 84.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 9.9e-37 156.4 83 86.7
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.7e-36 155.6 94 78.7
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.7e-36 155.6 85 83.5
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.4e-36 153.3 86 84.9
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 8.4e-36 153.3 85 82.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.4e-35 151.8 84 81.0
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-35 151.4 84 83.3
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-35 151.4 86 83.7
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-35 151.4 86 83.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 9.3e-35 149.8 85 83.5
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 9.3e-35 149.8 84 83.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.6e-34 149.1 83 78.3
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.1e-34 148.7 85 80.0
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 7.9e-34 146.7 81 82.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.8e-33 145.6 85 76.5
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 2.3e-33 145.2 84 76.2
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.3e-33 145.2 85 76.5
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.0e-33 144.8 84 77.4
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.1e-33 144.1 85 75.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 5.1e-33 144.1 85 75.3
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 8.7e-33 143.3 80 78.8
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.5e-32 142.5 80 80.0
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.5e-32 142.5 80 80.0
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.9e-32 142.1 85 75.3
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.3e-32 141.4 80 80.0
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.3e-32 141.4 80 80.0
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.3e-32 141.4 86 74.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.3e-32 141.4 86 74.4
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.3e-32 141.0 79 79.7
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 4.3e-32 141.0 89 73.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 4.3e-32 141.0 89 73.0
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.6e-32 140.6 86 74.4
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.6e-32 140.6 86 74.4
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.6e-32 140.6 77 83.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 9.6e-32 139.8 86 73.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 9.6e-32 139.8 80 76.2
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 73.3
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.1e-31 138.7 86 77.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 2.8e-31 138.3 68 91.2
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 2.8e-31 138.3 87 74.7
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.8e-31 137.5 75 78.7
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 82 78.0
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 75.6
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.8e-31 137.5 82 78.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 4.8e-31 137.5 82 78.0
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 74.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 6.2e-31 137.1 84 73.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 6.2e-31 137.1 79 77.2
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.1e-31 136.7 76 80.3
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.1e-30 136.3 82 74.4
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.1e-30 136.3 68 89.7
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.1e-30 136.3 77 77.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.4e-30 136.0 85 74.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 76 78.9
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.8e-30 135.6 76 78.9
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 75.9
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 3.1e-30 134.8 82 74.4
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-30 134.8 73 83.6
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 4.0e-30 134.4 79 75.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.0e-30 134.4 84 73.8
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.0e-30 134.4 77 76.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 4.0e-30 134.4 85 72.9
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.3e-30 134.0 79 75.9
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 5.3e-30 134.0 82 76.8
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 6.9e-30 133.7 79 75.9
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 6.9e-30 133.7 77 76.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.2e-29 132.9 86 72.1
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.5e-29 132.5 85 74.1
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.0e-29 132.1 84 66.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.0e-29 132.1 85 71.8
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 2.6e-29 131.7 77 75.3
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 2.6e-29 131.7 79 74.7
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 72.9
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 70.6
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 5.8e-29 130.6 86 73.3
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 5.8e-29 130.6 85 72.9
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 7.6e-29 130.2 91 67.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.3e-28 129.4 101 65.3
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 4.9e-28 127.5 94 64.9
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.9e-28 127.5 84 70.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 6.4e-28 127.1 84 71.4
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 6.4e-28 127.1 85 68.2
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.1e-27 126.3 87 65.5
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.4e-27 125.9 75 74.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.4e-27 125.9 85 68.2
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.4e-27 125.9 85 68.2
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.9e-27 125.6 63 85.7
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.4e-27 125.2 69 84.1
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.4e-27 125.2 84 67.9
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.2e-27 124.8 72 73.6
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.2e-27 124.8 85 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 5.5e-27 124.0 85 64.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 5.5e-27 124.0 71 80.3
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 5.5e-27 124.0 71 80.3
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 1.2e-26 122.9 90 67.8
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.2e-26 122.9 87 63.2
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.6e-26 122.5 77 74.0
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 66.3
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.1e-26 122.1 67 83.6
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 3.5e-26 121.3 86 66.3
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 4.6e-26 120.9 111 55.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 6.0e-26 120.6 84 66.7
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 6.0e-26 120.6 84 66.7
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.0e-25 119.8 74 74.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.3e-25 119.4 76 67.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.3e-25 119.4 85 70.6
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.3e-25 119.4 68 76.5
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 67 79.1
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 2.3e-25 118.6 86 64.0
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 3.9e-25 117.9 65 76.9
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 6.7e-25 117.1 86 61.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.1e-24 116.3 85 63.5
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.9e-24 115.5 87 64.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 7.4e-24 113.6 54 88.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.8e-23 110.9 87 62.1
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.8e-23 110.9 86 65.1
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 6.2e-23 110.5 67 76.1
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.1e-22 109.8 72 66.7
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.4e-22 109.4 56 85.7
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.1e-22 108.2 87 63.2
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.9e-22 107.1 54 87.0
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 6.9e-22 107.1 53 83.0
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 9.0e-22 106.7 52 84.6
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.5e-21 105.9 66 74.2
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 3.4e-21 104.8 98 55.1
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 5.8e-21 104.0 80 55.0
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 7.6e-21 103.6 71 66.2
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.0e-20 103.2 56 82.1
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.3e-20 102.8 85 63.5
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 4.9e-20 100.9 71 56.3
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 6.5e-20 100.5 77 59.7
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 8.4e-20 100.1 54 77.8
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.4e-19 99.4 52 82.7
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.7e-18 95.1 52 82.7
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 7.9e-18 93.6 100 51.0
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.3e-17 92.0 97 47.4
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.9e-16 89.0 68 63.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 7.4e-16 87.0 72 59.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.6e-15 85.9 64 57.8
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 8.2e-15 83.6 40 87.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.2e-12 75.5 51 68.6
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 5.0e-12 74.3 59 64.4
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 5.0e-12 74.3 59 52.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.9e-11 72.4 46 67.4
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 5.1e-09 64.3 62 43.5
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.3e-08 61.6 63 44.4
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.1e-06 54.7 113 36.3
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 6.9e-06 53.9 44 47.7


User provided reference genes

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