Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.2e-33 144.4 70 100.0
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 3.6e-24 114.4 76 76.3
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.4e-23 112.5 70 81.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.6e-22 108.2 70 77.1
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 9.7e-22 106.3 72 72.2
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 9.7e-22 106.3 72 72.2
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.3e-21 105.9 71 70.4
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.7e-21 105.5 73 69.9
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 1.7e-21 105.5 73 68.5
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 2.8e-21 104.8 73 67.1
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 4.8e-21 104.0 73 69.9
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 1.1e-20 102.8 73 68.5
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 1.1e-20 102.8 73 68.5
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.1e-20 102.8 71 69.0
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.4e-20 102.4 73 68.5
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 1.4e-20 102.4 74 67.6
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.4e-20 102.4 73 68.5
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 2.4e-20 101.7 73 68.5
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 3.1e-20 101.3 70 68.6
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 5.3e-20 100.5 63 73.0
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 6.9e-20 100.1 71 70.4
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.5e-19 99.0 71 66.2
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.6e-19 98.2 71 66.2
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 2.6e-19 98.2 73 69.9
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.4e-19 97.8 72 65.3
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 4.5e-19 97.4 70 68.6
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.3e-18 95.9 70 68.6
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.2e-18 95.1 72 63.9
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.9e-18 94.7 63 69.8
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 5.0e-18 94.0 74 63.5
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 6.5e-18 93.6 71 63.4
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 8.5e-18 93.2 74 60.8
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 8.5e-18 93.2 71 63.4
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.1e-17 92.8 74 60.8
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.4e-17 92.4 71 62.0
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.4e-17 92.4 63 68.3
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.9e-17 92.0 63 66.7
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 3.2e-17 91.3 53 75.5
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 3.2e-17 91.3 72 61.1
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 4.2e-17 90.9 70 64.3
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 5.5e-17 90.5 72 59.7
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 5.5e-17 90.5 70 64.3
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 7.2e-17 90.1 67 64.2
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 9.4e-17 89.7 46 89.1
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 9.4e-17 89.7 63 65.1
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 9.4e-17 89.7 77 58.4
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.2e-16 89.4 49 79.6
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 1.2e-16 89.4 76 59.2
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.2e-16 89.4 70 62.9
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.6e-16 89.0 72 59.7
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.6e-16 87.8 63 65.1
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 3.6e-16 87.8 78 60.3
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 4.7e-16 87.4 70 61.4
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 6.1e-16 87.0 72 66.7
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 8.0e-16 86.7 69 60.9
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 8.0e-16 86.7 72 61.1
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.3e-15 85.1 66 57.6
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 2.3e-15 85.1 72 62.5
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 3.0e-15 84.7 55 69.1
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 3.0e-15 84.7 67 59.7
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 3.0e-15 84.7 72 65.3
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.0e-15 84.7 69 58.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 5.2e-15 84.0 81 54.3
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 5.2e-15 84.0 73 58.9
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 6.7e-15 83.6 68 60.3
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.0e-14 82.0 72 56.9
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 4.4e-14 80.9 72 65.3
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.8e-12 75.5 70 51.4
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.4e-12 75.1 72 48.6
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.4e-12 75.1 72 48.6
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.4e-12 75.1 72 48.6
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.6e-11 72.4 46 67.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.0e-11 72.0 71 52.1
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.2e-10 68.6 54 61.1
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.9e-10 68.2 67 47.8
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 5.0e-10 67.4 49 65.3
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 6.5e-10 67.0 57 54.4
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 3.2e-09 64.7 50 60.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.2e-09 64.3 40 60.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 2.1e-08 62.0 68 48.5
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 6.1e-08 60.5 51 56.9
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 4.0e-07 57.8 50 62.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 5.2e-07 57.4 50 60.0
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 8.8e-07 56.6 50 60.0
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 1.2e-06 56.2 56 50.0
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 2.0e-06 55.5 54 53.7
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 2.0e-06 55.5 53 50.9
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 2.6e-06 55.1 50 60.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 3.3e-06 54.7 51 51.0


User provided reference genes

Program Settings