Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 9.3e-52 206.8 124 100.0
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 1.7e-37 159.5 133 76.7
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 7.4e-33 144.1 128 67.2
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-31 139.8 129 72.1
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 2.8e-24 115.5 130 58.5
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.4e-23 113.2 130 57.7
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 3.8e-21 105.1 134 56.0
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 5.0e-21 104.8 133 54.1
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.7e-19 99.0 132 53.8
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.4e-18 96.7 134 46.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 2.3e-18 95.9 132 50.8
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 2.3e-18 95.9 132 50.8
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 5.2e-18 94.7 127 47.2
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 6.8e-18 94.4 139 48.9
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 3.4e-17 92.0 125 46.4
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.3e-16 90.1 127 47.2
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 6.3e-16 87.8 127 44.1
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 6.3e-16 87.8 127 44.1
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 6.3e-16 87.8 126 46.8
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 8.3e-16 87.4 131 48.1
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-15 85.9 128 44.5
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-15 85.9 128 44.5
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 4.1e-15 85.1 125 45.6
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 4.1e-15 85.1 135 46.7
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.4e-15 84.7 128 43.8
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.7e-14 82.4 139 42.4
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.2e-13 79.3 127 42.5
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 3.2e-12 75.5 139 38.8
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 4.2e-12 75.1 133 45.1
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 4.2e-12 75.1 133 45.1
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.5e-12 74.7 131 43.5
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 5.5e-12 74.7 127 41.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.6e-11 72.0 141 37.6
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.7e-11 71.6 125 40.0
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 6.1e-11 71.2 133 44.4
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.8e-10 69.7 126 39.7
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.3e-10 69.3 127 39.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 5.2e-10 68.2 129 37.2
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.8e-10 67.8 127 39.4
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.8e-10 67.8 127 39.4
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.2e-09 67.0 143 37.1
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.5e-09 66.6 134 42.5
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-09 65.9 130 39.2
Cc02_g34950 Coffea canephora HOM05D004793 ORTHO05D004423 2.2e-08 62.8 140 35.0
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.2e-08 62.8 135 36.3
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 2.8e-08 62.4 131 40.5
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 2.8e-08 62.4 130 40.8
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 3.7e-08 62.0 136 38.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.9e-08 61.6 141 37.6
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 6.3e-08 61.2 124 36.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 6.3e-08 61.2 124 36.3
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.3e-08 60.8 129 39.5
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.1e-07 60.5 125 37.6
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-07 59.3 125 37.6
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 2.4e-07 59.3 143 36.4
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 2.4e-07 59.3 125 37.6
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 2.4e-07 59.3 125 37.6
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 2.4e-07 59.3 148 35.8
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.1e-07 58.5 130 39.2
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 4.1e-07 58.5 126 37.3
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 4.1e-07 58.5 118 40.7
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 5.4e-07 58.2 129 35.7
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.0e-07 57.8 130 39.2
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 9.2e-07 57.4 142 38.7
Solyc07g047827.1 Solanum lycopersicum HOM05D037802 ORTHO05D004423 9.2e-07 57.4 126 33.3
MSTRG.6642 Avicennia marina HOM05D004793 ORTHO05D004423 1.2e-06 57.0 124 38.7
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 1.2e-06 57.0 133 36.1
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 1.2e-06 57.0 125 36.8
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 1.6e-06 56.6 130 34.6
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.0e-06 56.2 130 33.8
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.7e-06 55.8 141 36.2
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.5e-06 55.5 127 37.0
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.5e-06 55.5 127 36.2
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 3.5e-06 55.5 124 33.1
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.5e-06 55.1 132 35.6
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 4.5e-06 55.1 132 37.1
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 4.5e-06 55.1 140 35.0
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 5.9e-06 54.7 135 34.8
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 7.7e-06 54.3 45 62.2
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.7e-06 54.3 127 35.4
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 7.7e-06 54.3 129 34.9
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 7.7e-06 54.3 121 35.5
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 7.7e-06 54.3 137 35.8
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 7.7e-06 54.3 141 36.2


User provided reference genes

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