Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 7.9e-269 929.9 469 100.0
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.0e-216 755.7 463 81.4
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 5.3e-180 634.8 475 71.8
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 2.5e-161 572.8 458 64.0
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 6.0e-160 568.2 461 63.6
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 4.8e-157 558.5 464 64.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 6.5e-154 548.1 438 64.6
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 3.7e-149 532.3 445 62.5
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.1e-142 510.8 448 59.4
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 5.7e-142 508.4 448 59.4
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.9e-138 496.1 390 65.1
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 9.7e-134 481.1 344 72.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.3e-109 401.0 436 49.5
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.4e-108 397.5 430 50.5
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 4.1e-108 396.0 441 51.0
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.4e-108 395.6 445 49.7
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 7.0e-108 395.2 445 49.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.0e-107 393.7 430 49.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 2.0e-107 393.7 442 50.2
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.0e-107 393.7 450 49.3
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 3.5e-107 392.9 442 51.1
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.5e-107 392.5 439 50.6
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 7.7e-107 391.7 438 50.7
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.3e-106 391.0 438 49.1
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 3.8e-106 389.4 435 49.4
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 6.6e-106 388.7 442 50.0
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-105 387.9 433 49.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.5e-105 387.5 433 50.1
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.2e-105 386.0 433 48.7
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.6e-104 384.0 433 48.7
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 2.8e-104 383.3 431 49.2
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 8.0e-104 381.7 440 48.6
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.0e-103 381.3 425 49.6
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.8e-103 380.6 433 48.3
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 4.0e-103 379.4 436 48.9
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 3.4e-102 376.3 433 48.5
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.3e-101 374.4 432 48.8
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.8e-100 370.5 435 47.4
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.4e-100 370.2 443 47.9
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 9.2e-100 368.2 419 48.7
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 7.8e-99 365.2 447 48.5
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-98 364.4 440 47.5
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 8.6e-98 361.7 445 46.1
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 4.3e-97 359.4 454 46.0
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 2.8e-96 356.7 434 47.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 2.8e-96 356.7 459 45.3
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 4.7e-96 355.9 429 45.9
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 6.1e-96 355.5 433 45.5
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 8.0e-96 355.1 433 46.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.0e-95 354.8 430 46.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.0e-95 354.8 442 45.5
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.3e-95 353.6 440 45.2
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.1e-95 353.2 440 45.9
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.4e-92 344.4 417 48.0
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.9e-92 344.0 440 44.5
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.2e-92 343.2 426 44.8
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.1e-92 342.8 424 44.3
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 4.1e-92 342.8 445 45.6
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 7.0e-92 342.0 434 47.2
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 2.7e-91 340.1 467 43.5
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.5e-91 339.7 424 43.9
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 2.3e-90 337.0 437 43.0
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.6e-90 335.5 431 44.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.1e-89 334.7 438 44.3
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.1e-89 334.7 438 44.3
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 3.3e-89 333.2 434 45.2
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.3e-89 333.2 419 44.9
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 5.6e-89 332.4 438 44.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 9.5e-89 331.6 423 43.3
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.2e-88 331.3 435 44.1
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.2e-88 331.3 448 44.9
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.6e-88 330.9 438 43.8
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.6e-88 330.9 438 43.8
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.6e-88 330.9 414 44.9
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 1.1e-87 328.2 438 43.4
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.1e-87 328.2 440 43.2
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.1e-87 328.2 380 47.4
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.8e-87 327.4 429 45.9
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 5.2e-87 325.9 429 46.2
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.5e-86 324.3 439 44.2
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 9.8e-86 321.6 384 47.4
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 6.4e-85 318.9 457 42.2
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 8.3e-85 318.5 440 43.0
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-84 318.2 378 48.1
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 3.2e-84 316.6 475 40.6
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 4.1e-84 316.2 449 43.4
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 7.1e-84 315.5 382 46.1
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 1.3e-82 311.2 501 37.9
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.0e-82 310.1 386 43.3
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 5.1e-82 309.3 380 45.5
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.4e-79 301.2 384 44.3
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 1.5e-78 297.7 330 51.2
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 5.8e-78 295.8 383 42.8
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 9.9e-78 295.0 380 42.9
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 2.9e-77 293.5 382 43.5
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 3.7e-77 293.1 380 43.2
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 3.7e-77 293.1 379 43.5
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.9e-76 290.8 451 39.5
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.2e-76 290.0 439 43.1
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.6e-75 287.7 455 40.4
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.1e-75 287.3 434 42.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.1e-73 281.6 308 49.7
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.2e-72 278.1 379 41.2
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 2.1e-72 277.3 434 41.7
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 3.1e-71 273.5 292 49.7
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.6e-70 270.4 378 40.7
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 3.4e-70 270.0 394 39.3
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 3.8e-69 266.5 423 38.8
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.9e-68 264.2 419 39.6
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 2.4e-68 263.8 353 41.6
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.2e-67 261.5 424 38.7
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 3.5e-67 260.0 406 39.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-63 247.7 361 39.1
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.6e-62 243.8 337 41.2
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.0e-58 231.9 444 36.3
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.0e-58 230.3 365 34.8
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 5.3e-55 219.5 386 38.1
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.4e-54 216.9 407 37.1
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.1e-51 207.6 422 33.4
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 5.6e-49 199.5 420 33.8
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 5.3e-47 193.0 367 33.2
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.2e-43 181.8 284 35.9
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.5e-41 174.9 272 39.7
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 3.1e-31 140.6 284 33.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.7e-17 93.2 146 38.4
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-13 81.3 100 47.0
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 5.0e-13 80.1 68 66.2
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 3.3e-09 67.4 132 32.6
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 3.7e-08 63.9 56 62.5
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 5.3e-07 60.1 57 54.4
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 7.0e-07 59.7 51 66.7
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 3.5e-06 57.4 52 65.4


User provided reference genes

Program Settings