Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 0.0e+00 1248.8 653 100.0
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 0.0e+00 1146.3 653 91.9
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 0.0e+00 1094.7 653 87.9
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.7e-299 1031.6 653 82.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.3e-298 1029.2 653 81.6
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.3e-297 1024.2 653 81.9
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.1e-292 1007.7 656 80.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.0e-290 1001.5 653 80.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 7.3e-289 996.9 653 80.1
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 9.0e-279 963.4 683 74.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.6e-275 952.6 652 77.5
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 6.2e-272 940.6 653 76.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.8e-269 931.4 647 76.2
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.6e-264 916.0 646 75.7
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-264 915.2 651 74.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.7e-264 914.8 651 74.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-262 908.7 589 80.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.6e-251 871.7 646 72.8
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 9.4e-244 847.0 663 65.8
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-238 829.7 651 67.1
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.5e-238 829.7 647 67.7
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 7.7e-238 827.4 652 66.6
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.0e-237 827.0 687 64.2
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.7e-237 826.2 655 66.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 6.5e-237 824.3 647 66.5
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 6.5e-237 824.3 647 66.5
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.5e-237 824.3 666 64.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.2e-236 820.8 651 66.4
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.7e-235 818.1 666 65.2
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.4e-234 816.6 639 66.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.8e-234 816.2 687 62.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-233 812.4 638 66.9
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.3e-233 812.0 657 66.4
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 7.0e-231 804.3 650 65.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 9.1e-231 803.9 644 65.1
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.6e-230 803.1 661 65.1
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 2.6e-230 802.4 651 64.2
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.7e-229 799.7 656 64.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.2e-229 799.3 652 64.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.0e-229 798.1 636 66.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.9e-228 796.2 656 64.2
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 9.4e-228 793.9 652 64.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.6e-227 793.1 660 64.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 4.7e-227 791.6 651 63.7
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 6.1e-227 791.2 662 62.8
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.0e-226 790.4 655 63.5
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.5e-225 784.3 623 65.7
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-224 783.5 657 61.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 9.1e-223 777.3 647 61.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 5.0e-221 771.5 647 61.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.5e-221 771.2 639 64.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.5e-220 768.1 654 61.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 3.7e-216 755.4 649 59.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 6.3e-216 754.6 642 61.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.4e-215 752.7 653 61.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.7e-214 749.2 651 61.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.5e-214 748.4 652 61.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.3e-213 746.9 647 60.3
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-213 746.9 650 62.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 3.8e-213 745.3 638 60.5
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.5e-212 742.7 660 60.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 9.5e-212 740.7 657 60.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.2e-211 740.3 641 60.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 4.0e-210 735.3 644 59.6
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.2e-210 734.9 644 59.8
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.8e-210 734.6 654 60.1
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 4.4e-209 731.9 646 58.0
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.7e-208 729.9 662 59.2
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 8.3e-208 727.6 644 58.4
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 8.3e-208 727.6 662 59.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.4e-207 726.9 644 58.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.1e-207 725.3 614 61.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 7.0e-207 724.5 644 58.4
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 7.0e-207 724.5 644 58.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.6e-206 723.4 643 58.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 4.5e-206 721.8 650 57.1
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 4.5e-206 721.8 638 59.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.3e-205 719.5 644 57.9
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 5.0e-205 718.4 640 58.3
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 5.0e-205 718.4 648 58.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 6.6e-205 718.0 643 58.0
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.6e-204 714.9 665 56.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-202 709.9 631 58.3
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.0e-202 708.8 647 59.4
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 5.2e-202 708.4 561 66.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 8.9e-202 707.6 631 58.3
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.2e-201 707.2 650 56.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.3e-200 703.7 542 66.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.9e-200 701.8 673 55.7
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 6.4e-200 701.4 650 56.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.1e-199 698.7 649 58.2
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.3e-197 693.7 710 53.0
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.2e-195 687.2 662 55.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.9e-191 673.3 645 54.9
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 7.3e-188 661.4 592 60.8
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.6e-187 659.1 652 54.3
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 6.8e-186 654.8 651 54.1
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-185 652.9 651 53.8
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.4e-185 652.5 536 62.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 5.1e-181 638.6 574 60.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 7.3e-172 608.2 531 59.7
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 6.2e-171 605.1 629 52.0
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.3e-168 597.4 641 52.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.4e-167 593.2 537 56.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 7.1e-167 591.7 651 50.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 9.3e-167 591.3 554 58.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-164 583.6 422 73.2
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 9.6e-164 581.3 512 59.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.4e-162 577.4 629 49.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.9e-157 559.3 631 48.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.6e-153 546.6 640 47.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.7e-142 510.0 399 64.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 3.9e-141 506.1 652 43.9
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 7.2e-135 485.3 631 44.7
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.6e-134 483.0 645 42.6
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.1e-134 482.3 657 42.8
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.9e-133 479.6 435 57.0
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 8.8e-133 478.4 639 40.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 5.3e-130 469.2 653 43.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 9.7e-124 448.4 391 63.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 6.8e-109 399.1 430 54.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.4e-92 343.6 239 73.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.0e-86 322.4 611 36.0
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.2e-85 319.7 245 64.9
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 6.0e-81 306.2 368 49.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 9.9e-68 262.3 251 59.4
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.5e-63 248.4 436 38.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.6e-62 243.8 225 61.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.3e-59 235.3 381 41.5
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-59 234.6 210 63.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 8.7e-56 222.6 607 30.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.2e-51 208.0 182 63.2
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.9e-45 186.4 133 70.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-44 184.5 188 58.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 9.9e-44 182.6 292 40.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 9.9e-44 182.6 307 40.7
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.9e-39 168.3 176 47.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.1e-37 162.5 255 38.8
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.1e-34 152.5 236 43.6
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 5.5e-34 150.2 604 25.8
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 9.6e-31 139.4 96 75.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 3.2e-26 124.4 93 62.4
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.2e-26 124.4 108 57.4
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-26 122.9 132 53.8
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-25 120.6 134 53.7
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.3e-24 119.0 155 48.4
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 3.9e-24 117.5 86 72.1
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.7e-24 116.7 132 53.8
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.5e-23 115.5 113 58.4
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-23 115.2 78 76.9
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.0e-19 100.5 99 60.6
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-17 95.5 67 76.1
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-16 90.5 70 64.3
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 8.8e-16 89.7 72 62.5
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-13 82.0 70 58.6
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.1e-13 81.3 64 67.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 5.9e-12 77.0 57 59.6
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-10 72.4 46 76.1
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 5.5e-10 70.5 73 53.4
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.3e-08 65.1 59 50.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 3.9e-08 64.3 131 33.6
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 5.1e-08 63.9 51 56.9
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 6.7e-08 63.5 64 53.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-07 62.0 52 57.7
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 2.6e-07 61.6 51 62.7
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 3.7e-06 57.8 196 25.0


User provided reference genes

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