Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 6.8e-265 916.8 459 100.0
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.3e-251 870.2 459 93.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.7e-236 822.4 461 90.5
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.6e-221 772.7 460 85.7
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.3e-220 769.6 460 85.2
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.9e-211 739.2 465 80.4
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 7.4e-211 737.3 464 81.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.1e-209 733.4 462 79.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 6.9e-209 730.7 461 80.3
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.4e-206 723.0 466 79.4
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 2.4e-206 722.2 389 92.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.8e-199 698.4 389 88.7
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 5.7e-195 684.5 456 77.4
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.3e-194 683.3 460 75.7
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.1e-194 682.6 420 81.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 4.1e-193 678.3 434 79.5
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 9.0e-193 677.2 420 80.5
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.3e-191 673.3 460 75.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.7e-191 672.9 451 75.8
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.8e-191 671.8 434 78.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 5.0e-191 671.4 457 75.5
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.1e-190 670.2 443 75.8
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.9e-190 669.5 427 78.2
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.9e-190 669.5 461 75.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.2e-189 666.8 457 74.6
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.1e-189 666.0 461 74.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 6.1e-189 664.5 459 74.1
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-188 662.1 460 74.1
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.0e-188 662.1 468 73.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.9e-188 661.8 442 75.3
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 8.7e-188 660.6 459 74.3
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.1e-187 660.2 457 73.5
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-187 659.8 459 74.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.5e-187 659.8 471 72.8
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.5e-187 659.8 434 75.8
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-187 659.8 460 73.9
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.9e-187 659.4 410 80.0
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.5e-187 659.1 460 73.7
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.5e-187 659.1 460 74.3
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.3e-187 658.7 455 73.2
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 4.3e-187 658.3 460 73.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 4.3e-187 658.3 428 78.0
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 7.4e-187 657.5 391 81.6
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 9.7e-187 657.1 438 76.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 9.7e-187 657.1 400 80.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 9.7e-187 657.1 462 71.4
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.6e-186 656.4 455 73.2
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.8e-186 655.6 461 72.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 4.8e-186 654.8 459 73.2
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 4.8e-186 654.8 436 75.0
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 8.2e-186 654.1 459 72.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.8e-185 652.9 386 81.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.4e-185 652.5 459 73.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.4e-185 652.5 383 82.8
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.1e-185 652.1 453 73.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.3e-185 651.4 390 82.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 5.3e-185 651.4 431 76.1
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 9.1e-185 650.6 414 77.8
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 9.1e-185 650.6 391 81.3
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.2e-184 650.2 391 81.3
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.2e-184 650.2 380 84.2
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.5e-184 649.8 458 73.4
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.0e-184 649.4 392 81.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.6e-184 649.0 382 81.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 3.4e-184 648.7 455 72.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.5e-184 648.3 460 72.6
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.5e-184 648.3 414 77.1
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 5.9e-184 647.9 373 84.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 7.7e-184 647.5 390 82.1
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.0e-183 647.1 460 70.9
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.7e-183 646.4 453 72.6
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.7e-183 646.4 456 72.6
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.7e-183 646.4 453 72.4
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.7e-183 646.4 428 75.9
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.2e-183 646.0 460 70.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 2.9e-183 645.6 400 80.8
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.8e-183 645.2 460 72.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.5e-183 644.4 378 82.0
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-182 642.9 431 75.6
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.2e-182 642.1 434 74.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 5.5e-182 641.3 383 80.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.2e-182 641.0 460 71.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 9.4e-182 640.6 392 80.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.7e-181 639.0 438 73.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 6.1e-181 637.9 387 79.8
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.3e-180 636.0 386 81.1
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.3e-180 636.0 461 70.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-180 635.2 401 77.1
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 8.8e-180 634.0 434 73.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.1e-179 633.6 398 76.6
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.0e-179 632.9 462 69.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.6e-179 632.5 413 77.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.6e-179 632.5 379 80.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.4e-179 631.7 387 79.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.7e-179 631.3 459 69.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.8e-178 629.0 459 69.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 3.7e-178 628.6 415 76.4
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-177 627.1 461 69.4
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 7.7e-176 620.9 367 80.4
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.7e-176 620.9 527 63.2
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.9e-172 608.6 416 72.4
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.2e-172 608.2 387 77.5
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 8.8e-172 607.4 371 79.5
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 3.8e-167 592.0 371 74.9
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.1e-165 586.3 371 75.5
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-155 553.5 357 74.5
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.1e-153 545.8 406 69.2
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.2e-149 533.9 411 64.7
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.4e-148 530.4 460 63.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.4e-145 519.6 439 62.0
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 3.8e-143 512.3 458 61.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 6.6e-143 511.5 353 71.4
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.8e-141 506.1 409 64.5
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.0e-140 502.3 302 80.5
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.4e-137 493.0 373 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.2e-136 490.7 345 69.0
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.2e-136 490.7 343 73.5
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 5.0e-135 485.3 366 66.7
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.0e-133 478.0 276 82.6
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 2.9e-130 469.5 374 62.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.9e-126 456.8 276 79.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.9e-123 444.5 289 74.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.6e-117 427.2 275 76.7
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.8e-114 416.0 459 52.9
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.3e-111 407.5 252 77.8
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.3e-110 402.9 326 64.7
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.8e-109 399.8 288 68.4
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.2e-104 384.4 313 66.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 3.2e-97 359.8 359 54.0
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.5e-96 356.3 323 60.7
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 6.0e-96 355.5 210 82.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.0e-96 355.5 319 61.4
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 4.3e-94 349.4 331 53.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.8e-92 344.0 218 77.5
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.1e-86 324.7 201 74.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 3.7e-85 319.7 226 72.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 7.4e-78 295.4 211 68.7
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.2e-72 278.1 174 77.0
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-62 244.6 161 73.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 7.4e-62 242.3 343 41.7
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-59 234.6 161 72.0
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.9e-58 230.3 124 84.7
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 6.5e-58 229.2 135 84.4
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 5.5e-57 226.1 291 43.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.2e-48 198.4 134 73.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.1e-40 171.0 112 81.2
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-36 158.7 84 86.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-35 155.2 111 73.9
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.1e-33 148.7 112 67.0
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.2e-29 134.4 122 59.8
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.4e-28 131.7 77 85.7
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.6e-24 118.2 85 70.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 5.2e-23 113.2 117 56.4
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.7e-21 108.2 65 75.4
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-17 95.1 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 3.6e-16 90.5 59 81.4
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 4.0e-15 87.0 55 72.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 8.9e-15 85.9 68 64.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 7.5e-14 82.8 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.1e-09 68.9 44 68.2
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 3.1e-07 60.8 220 26.8


User provided reference genes

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