Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 8.3e-114 413.7 205 100.0
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 6.2e-109 397.5 205 97.6
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.5e-107 392.9 205 93.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.9e-105 386.0 205 91.2
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.2e-101 373.2 205 88.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.1e-100 368.6 205 86.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.2e-100 367.9 205 86.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-97 359.8 203 85.2
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-97 359.8 203 85.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.4e-97 359.8 206 85.4
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.4e-97 357.8 205 84.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 5.1e-95 351.3 205 84.4
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 7.3e-94 347.4 205 82.9
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.8e-93 345.5 205 83.4
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 6.2e-85 317.8 200 76.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 8.1e-85 317.4 205 72.2
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.8e-84 316.2 200 75.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.0e-83 312.8 197 73.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.6e-83 312.4 200 76.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.6e-83 312.4 200 76.0
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.4e-83 312.0 205 73.2
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.4e-83 312.0 199 73.9
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.5e-83 311.6 199 73.9
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 5.8e-83 311.2 200 76.0
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.7e-82 309.7 203 76.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.7e-82 309.7 201 71.1
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 2.9e-82 308.9 205 72.2
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.8e-82 308.5 200 75.5
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 6.4e-82 307.8 201 74.1
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.4e-82 307.8 200 72.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.1e-81 307.0 200 72.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.4e-81 306.6 200 72.0
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 4.2e-81 305.1 207 71.0
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 5.4e-81 304.7 207 71.0
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 7.1e-81 304.3 207 71.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 9.3e-81 303.9 201 70.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.2e-80 303.5 200 73.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.2e-80 303.5 200 72.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.1e-80 302.8 205 69.8
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.7e-80 302.4 207 70.5
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 207 69.6
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.5e-80 302.0 207 69.6
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 201 70.1
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.6e-80 301.6 201 70.1
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 68.9
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 70.9
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.9e-79 298.5 207 70.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 3.9e-79 298.5 206 67.0
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 206 67.5
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.9e-79 298.5 206 67.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.1e-79 298.1 207 70.5
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 5.1e-79 298.1 201 68.7
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 6.7e-79 297.7 207 68.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 6.7e-79 297.7 201 69.7
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 6.7e-79 297.7 201 68.2
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.9e-78 296.2 207 68.1
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.9e-78 296.2 196 69.4
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.5e-78 295.8 207 69.1
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.5e-78 295.8 207 69.1
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.5e-78 295.8 207 69.1
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 3.3e-78 295.4 207 69.1
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.3e-78 295.4 222 67.6
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.3e-78 295.4 202 69.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 67.3
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 4.3e-78 295.0 207 68.6
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 5.6e-78 294.7 202 70.3
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.6e-78 294.7 204 69.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 9.6e-78 293.9 207 68.6
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 9.6e-78 293.9 201 70.6
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 9.6e-78 293.9 201 68.7
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.1e-77 292.7 197 70.1
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.8e-77 292.4 191 72.8
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.6e-77 292.0 207 68.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.2e-77 291.2 206 68.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 6.2e-77 291.2 203 69.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.1e-76 290.4 199 69.3
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.8e-76 289.7 200 70.5
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.8e-76 289.7 199 68.8
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.1e-76 288.9 217 64.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 3.1e-76 288.9 199 68.8
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 5.3e-76 288.1 200 71.5
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 5.3e-76 288.1 199 68.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 9.0e-76 287.3 200 73.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.2e-75 287.0 206 67.5
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.0e-75 286.2 205 67.8
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.0e-75 286.2 199 69.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.0e-75 286.2 199 68.8
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.6e-75 285.8 206 69.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.6e-75 285.8 200 68.0
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 2.6e-75 285.8 199 67.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.6e-75 285.8 199 68.8
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 9.9e-75 283.9 199 68.3
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 8.4e-74 280.8 198 69.2
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.1e-73 280.4 199 68.8
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.1e-73 280.4 198 69.2
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.9e-73 279.6 199 68.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 9.3e-73 277.3 206 67.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 9.3e-73 277.3 199 68.8
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.2e-72 276.9 200 66.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.2e-72 276.9 205 64.9
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.6e-72 275.0 200 67.0
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.6e-72 275.0 259 57.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 7.9e-72 274.2 189 67.7
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.3e-71 272.7 200 65.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.9e-71 271.9 200 65.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.1e-71 271.6 208 66.3
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.7e-71 271.2 200 64.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 6.7e-71 271.2 198 67.2
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 7.4e-70 267.7 201 63.7
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.1e-68 263.8 201 63.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.0e-67 259.6 201 63.2
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.4e-67 258.8 203 60.1
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.8e-67 258.1 201 65.7
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.8e-66 255.4 200 62.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.4e-65 253.4 203 59.6
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.2e-65 252.3 203 58.6
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.0e-64 248.1 191 61.8
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.8e-63 246.5 206 58.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.5e-62 242.7 202 59.9
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.1e-55 218.4 135 79.3
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 9.7e-54 214.2 212 50.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.8e-53 212.6 142 71.8
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 9.1e-52 207.6 209 50.2
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 7.7e-51 204.5 203 52.2
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 6.5e-50 201.4 139 69.1
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.2e-48 197.2 200 53.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-48 196.8 144 71.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.1e-48 196.4 141 69.5
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.1e-48 194.9 141 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 3.1e-44 182.6 206 44.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.5e-41 172.9 129 62.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.2e-41 172.6 167 55.1
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.0e-31 139.4 174 44.8
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 5.3e-28 128.6 197 38.6
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.5e-25 120.6 69 85.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.2e-24 117.5 194 34.0
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 6.1e-24 115.2 125 46.4
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.4e-23 114.0 99 57.6
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 6.8e-23 111.7 202 34.7
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.0e-22 110.2 77 63.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-21 107.5 135 48.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.9e-19 98.6 66 65.2
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.1e-16 90.1 65 64.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-15 87.8 65 69.2
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.3e-13 80.9 51 72.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.1e-12 77.8 72 61.1
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.6e-08 62.8 46 65.2
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.6e-08 62.8 46 65.2
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.1e-08 62.0 93 37.6
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 8.0e-08 61.6 50 52.0
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 1.8e-07 60.5 128 35.2
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 6.8e-07 58.5 81 37.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.2e-06 57.8 64 48.4
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 3.4e-06 56.2 42 54.8


User provided reference genes

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