Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.1e-183 645.6 338 100.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.2e-172 609.0 338 90.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.5e-157 558.1 342 83.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 7.7e-149 530.8 336 79.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 9.4e-147 523.9 338 82.0
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.2e-127 459.5 272 80.9
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 8.3e-127 457.6 272 80.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-123 446.0 290 77.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 9.5e-123 444.1 336 71.1
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.6e-122 442.2 341 65.7
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 4.7e-122 441.8 341 65.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.8e-114 416.0 268 75.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 5.2e-113 411.8 336 62.2
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.1e-107 394.0 286 65.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.5e-107 392.9 336 60.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.1e-105 387.5 271 67.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.3e-105 386.3 274 66.4
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 6.8e-105 384.8 265 66.4
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.5e-104 383.6 287 62.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.2e-103 379.8 275 65.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.9e-103 379.4 276 65.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 3.7e-103 379.0 275 64.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.4e-102 377.1 267 65.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.7e-101 372.9 321 58.9
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 6.0e-101 371.7 274 63.1
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.3e-100 369.8 269 66.9
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.0e-100 369.4 279 64.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.0e-100 369.4 328 55.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.5e-99 367.1 267 62.9
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.3e-99 365.5 267 64.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 5.6e-99 365.2 267 63.7
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 7.3e-99 364.8 276 65.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.5e-99 364.4 274 62.8
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.7e-98 362.1 285 61.8
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 6.2e-98 361.7 275 61.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 8.9e-97 357.8 323 56.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-96 356.7 272 64.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-96 356.7 272 64.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 4.4e-96 355.5 286 61.5
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 9.9e-96 354.4 271 62.4
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-95 354.0 268 64.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.4e-95 351.7 269 63.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 8.4e-95 351.3 272 61.8
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.2e-94 349.4 264 62.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.2e-94 349.4 268 61.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 5.4e-94 348.6 276 59.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.7e-93 346.3 284 60.6
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.9e-91 340.1 276 59.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.5e-91 339.7 274 59.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.3e-91 339.3 276 59.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.2e-90 337.4 301 58.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.2e-90 337.4 270 62.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.2e-90 337.4 267 61.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-90 337.0 204 77.5
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.6e-90 335.9 270 58.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 6.2e-90 335.1 279 59.9
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 6.2e-90 335.1 266 57.9
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.4e-89 333.2 270 60.0
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 4.0e-89 332.4 266 57.1
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.0e-89 332.4 310 53.9
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 6.9e-89 331.6 270 59.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.9e-89 331.3 266 57.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.2e-88 330.9 264 60.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.6e-88 329.7 268 60.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.6e-88 329.7 267 56.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.4e-88 329.3 310 53.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 9.9e-88 327.8 271 59.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.7e-87 327.0 275 58.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.2e-87 326.6 265 58.1
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.8e-87 325.9 270 58.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 4.9e-87 325.5 273 60.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.9e-87 325.5 284 54.2
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 6.4e-87 325.1 268 57.5
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.4e-86 323.2 286 55.2
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.4e-86 322.0 266 55.3
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 5.4e-86 322.0 284 55.6
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.6e-85 320.5 271 57.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-85 320.1 274 56.6
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.5e-85 319.3 277 54.5
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.5e-85 319.3 271 56.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 4.6e-85 318.9 287 56.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 6.0e-85 318.5 320 51.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.7e-84 317.0 270 56.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.9e-84 315.8 266 56.4
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 5.1e-84 315.5 267 55.1
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.9e-83 313.5 275 55.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.9e-83 313.5 287 53.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.3e-83 312.8 268 58.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.3e-82 310.8 273 54.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.6e-82 310.5 275 55.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 8.1e-82 308.1 271 55.0
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.4e-81 306.6 305 49.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.4e-80 302.8 271 55.4
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.8e-80 302.0 285 52.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-79 300.8 267 52.8
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.7e-79 300.4 274 54.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.2e-79 300.1 288 52.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.8e-79 299.3 274 53.6
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 3.8e-79 299.3 267 52.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 6.4e-79 298.5 305 50.2
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.9e-76 289.3 270 51.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.5e-75 286.6 288 52.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.3e-75 286.2 333 45.3
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 3.3e-75 286.2 267 51.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.3e-74 284.3 267 54.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.2e-74 282.0 274 50.7
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.4e-73 280.0 266 49.2
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.2e-72 277.7 267 55.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.2e-70 269.6 273 49.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-69 267.3 203 64.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.6e-69 267.3 203 64.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.1e-69 266.9 266 47.4
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.1e-68 262.3 267 47.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.3e-67 259.6 269 46.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.3e-67 259.2 198 65.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 4.3e-67 259.2 269 47.2
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 9.6e-67 258.1 269 45.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.7e-66 256.1 272 49.6
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.1e-65 254.6 265 47.5
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.2e-63 246.9 238 50.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.9e-62 243.8 250 48.8
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.2e-61 241.1 288 45.5
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.3e-55 221.1 237 48.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.9e-55 219.9 262 44.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.0e-55 219.2 257 43.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.1e-52 209.1 279 39.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.5e-51 207.6 172 57.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.7e-51 204.9 273 38.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.1e-49 199.5 262 41.2
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 9.1e-49 198.4 178 52.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.5e-48 197.6 264 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.9e-48 195.7 264 39.4
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-43 181.0 262 39.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 5.7e-43 179.1 267 36.0
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.2e-42 177.2 277 35.7
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.4e-41 174.5 260 36.2
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 3.5e-32 143.3 107 65.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.5e-31 138.7 206 37.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.7e-29 133.7 98 67.3
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.9e-24 115.9 128 45.3
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.2e-22 110.2 134 56.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 4.2e-22 109.8 86 57.0
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-19 101.3 203 32.0
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-17 95.1 68 66.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-17 95.1 68 66.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.5e-14 84.0 134 34.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 4.4e-11 73.2 263 24.3
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 3.7e-10 70.1 193 29.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 2.0e-08 64.3 199 27.1


User provided reference genes

Program Settings