Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 1.5e-98 365.2 180 100.0
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 2.6e-82 311.2 179 86.0
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 5.0e-62 243.8 186 68.8
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 2.5e-61 241.5 183 66.7
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 3.3e-61 241.1 183 68.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 2.1e-60 238.4 141 80.9
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 4.0e-59 234.2 183 66.1
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 1.1e-56 226.1 178 64.6
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 2.3e-51 208.4 183 61.2
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 2.6e-50 204.9 181 60.8
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 4.4e-50 204.1 183 60.7
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 7.5e-50 203.4 187 56.7
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 6.0e-47 193.7 131 72.5
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 6.0e-47 193.7 131 72.5
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 9.9e-42 176.4 180 51.7
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 1.3e-41 176.0 164 55.5
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 2.9e-41 174.9 151 57.6
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 2.9e-41 174.9 151 57.6
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 2.9e-41 174.9 151 57.6
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 8.4e-41 173.3 167 56.3
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 1.4e-40 172.6 151 55.0
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.9e-40 172.2 180 52.2
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 3.2e-40 171.4 169 53.3
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 7.1e-40 170.2 155 55.5
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 1.2e-39 169.5 156 55.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 1.6e-39 169.1 147 54.4
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 2.1e-39 168.7 153 56.2
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 2.1e-39 168.7 151 55.0
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 3.5e-39 167.9 151 54.3
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 6.0e-39 167.2 161 50.9
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 6.0e-39 167.2 161 50.9
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 7.8e-39 166.8 151 53.6
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 1.0e-38 166.4 180 50.0
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 2.3e-38 165.2 161 50.3
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 1.5e-37 162.5 180 50.6
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 2.5e-37 161.8 154 53.9
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 3.3e-37 161.4 165 51.5
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 3.3e-37 161.4 151 53.6
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 5.6e-37 160.6 150 52.0
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 9.6e-37 159.8 165 51.5
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 1.2e-36 159.5 166 45.2
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 3.6e-36 157.9 180 49.4
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 4.7e-36 157.5 156 52.6
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 6.2e-36 157.1 180 47.8
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.1e-35 156.4 144 51.4
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.1e-35 156.4 144 51.4
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.1e-35 156.4 144 51.4
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 1.1e-35 156.4 120 58.3
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 2.4e-35 155.2 179 46.4
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 5.2e-35 154.1 163 49.7
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 9.0e-35 153.3 144 50.0
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 1.2e-34 152.9 138 50.0
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 2.0e-34 152.1 171 45.0
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 2.0e-34 152.1 152 47.4
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 2.0e-34 152.1 118 59.3
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.6e-34 151.8 144 50.7
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 2.6e-34 151.8 119 57.1
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 2.6e-34 151.8 133 51.1
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 4.4e-34 151.0 151 51.0
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 7.6e-34 150.2 148 48.6
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 2.9e-33 148.3 151 49.7
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 4.9e-33 147.5 148 51.4
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 4.9e-33 147.5 118 57.6
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 8.4e-33 146.7 156 49.4
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 1.1e-32 146.4 135 49.6
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 1.4e-32 146.0 118 57.6
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 1.9e-32 145.6 159 47.8
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.9e-32 145.6 146 45.9
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 1.9e-32 145.6 116 53.4
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 2.4e-32 145.2 138 47.8
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.4e-32 145.2 118 56.8
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 4.2e-32 144.4 118 51.7
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 7.1e-32 143.7 124 48.4
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 7.1e-32 143.7 111 56.8
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 2.7e-31 141.7 110 54.5
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 3.5e-31 141.4 159 47.8
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 4.6e-31 141.0 164 42.7
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 4.6e-31 141.0 179 46.4
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 6.0e-31 140.6 134 47.0
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 6.0e-31 140.6 146 45.2
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.0e-30 139.8 154 48.1
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 5.1e-30 137.5 118 52.5
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.5e-29 136.0 144 44.4
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 2.5e-29 135.2 111 49.5
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 7.3e-29 133.7 122 51.6
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 2.8e-28 131.7 169 45.6
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 8.1e-28 130.2 152 44.7
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.8e-27 129.0 153 45.1
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 1.8e-27 129.0 154 42.9
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 5.3e-27 127.5 154 40.9
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.9e-27 127.1 143 43.4
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 9.0e-27 126.7 145 46.2
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 3.4e-26 124.8 159 41.5
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 6.4e-25 120.6 166 39.8
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.4e-25 120.6 180 39.4
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 3.9e-22 111.3 80 58.8
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 5.1e-22 110.9 111 45.0
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 2.4e-19 102.1 112 40.2
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 1.5e-18 99.4 86 51.2
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 6.0e-15 87.4 48 85.4
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 3.9e-14 84.7 47 87.2
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 1.6e-12 79.3 47 80.9
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 2.1e-12 79.0 111 36.9
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 5.3e-11 74.3 48 72.9
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 2.0e-10 72.4 46 73.9
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 2.6e-10 72.0 44 79.5
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 1.0e-09 70.1 48 62.5
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 4.6e-07 61.2 137 31.4
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.6e-07 61.2 99 29.3
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.0e-06 60.1 104 30.8
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 2.3e-06 58.9 41 68.3
HanXRQChr09g0263281 Helianthus annuus HOM05D002460 ORTHO05D002716 2.3e-06 58.9 117 27.4
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 2.3e-06 58.9 44 61.4
ECA232G4177 Erigeron canadensis HOM05D002460 ORTHO05D002716 3.0e-06 58.5 119 31.9
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.1e-06 57.8 100 30.0
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 5.1e-06 57.8 113 26.5
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 5.1e-06 57.8 98 25.5
Sc05g0000430 Simmondsia chinensis HOM05D000424 ORTHO05D002854 6.7e-06 57.4 140 27.9
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 6.7e-06 57.4 102 26.5
Ca_14278_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 8.7e-06 57.0 132 26.5
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 8.7e-06 57.0 95 31.6
SGA_v2.0_scaffold7G03966 Striga asiatica HOM05D006740 ORTHO05D008571 8.7e-06 57.0 113 25.7
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 8.7e-06 57.0 93 32.3


User provided reference genes

Program Settings