Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 5.1e-189 664.8 502 100.0
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 5.7e-156 555.1 502 87.8
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 6.5e-144 515.0 504 82.3
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.2e-136 490.0 503 80.5
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 2.2e-115 420.2 461 76.8
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.4e-114 417.5 508 75.4
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 3.8e-112 409.5 508 72.2
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 3.3e-111 406.4 523 69.2
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 9.5e-111 404.8 505 73.3
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 4.0e-109 399.4 521 68.9
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 1.1e-106 391.3 529 70.1
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.8e-106 390.6 531 69.9
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.3e-104 383.6 406 79.6
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.5e-103 380.2 460 74.1
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 8.9e-101 371.7 503 67.0
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 9.8e-100 368.2 460 71.5
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.2e-99 367.1 470 70.4
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 3.7e-99 366.3 503 67.0
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.7e-99 366.3 503 67.0
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 8.3e-99 365.2 470 70.2
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.9e-98 364.0 462 71.6
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.6e-97 360.9 524 66.8
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 4.3e-95 352.8 471 71.3
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.1e-93 346.7 464 69.2
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.2e-92 344.7 465 70.3
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.5e-92 344.4 489 68.7
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.5e-92 344.4 511 64.0
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 5.8e-92 342.4 504 65.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 5.8e-92 342.4 535 59.8
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 9.8e-92 341.7 463 69.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 9.8e-92 341.7 463 69.5
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 9.8e-92 341.7 525 62.3
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.2e-91 340.5 502 64.9
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 2.2e-91 340.5 469 67.4
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.9e-91 340.1 464 69.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 6.4e-91 339.0 469 69.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 8.3e-91 338.6 469 69.1
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.1e-90 338.2 525 62.3
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.9e-90 337.4 525 61.9
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 4.1e-90 336.3 517 62.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.2e-89 334.7 461 71.8
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 2.1e-86 323.9 464 58.2
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.1e-86 323.9 519 62.6
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.8e-86 323.6 476 64.9
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 6.8e-85 318.9 499 64.3
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 3.4e-84 316.6 333 84.7
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 5.8e-84 315.8 516 63.2
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.7e-83 314.3 465 61.1
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.9e-83 313.5 508 61.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.7e-83 313.2 477 66.7
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 4.9e-83 312.8 489 66.5
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 4.9e-83 312.8 503 63.6
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 4.9e-83 312.8 473 63.6
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 6.4e-83 312.4 461 65.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 8.3e-83 312.0 355 79.4
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.9e-82 310.8 511 61.8
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.2e-81 308.1 481 66.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 2.7e-81 307.0 518 59.5
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 4.6e-81 306.2 354 75.1
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.6e-81 306.2 526 56.8
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 8.6e-80 302.0 454 66.1
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.9e-79 300.8 526 58.6
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.5e-79 300.4 464 67.7
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.5e-79 300.4 472 64.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 7.3e-79 298.9 534 59.0
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.2e-78 298.1 507 58.8
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.4e-77 294.7 539 56.2
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.4e-77 294.7 524 57.4
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.4e-76 289.7 404 71.3
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 7.6e-76 288.9 537 57.7
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.3e-75 288.1 475 62.5
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.9e-75 286.2 458 62.4
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.9e-74 284.3 500 59.8
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 3.2e-74 283.5 469 61.4
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 3.2e-74 283.5 458 66.2
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 5.4e-74 282.7 511 54.2
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 3.5e-73 280.0 482 60.2
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.5e-73 280.0 477 60.8
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 6.0e-73 279.3 475 62.7
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.0e-72 278.5 486 57.6
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.0e-72 278.5 496 56.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.0e-72 278.5 511 56.4
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.3e-72 278.1 503 59.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.3e-72 277.3 334 77.5
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 5.1e-72 276.2 473 62.8
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 9.6e-71 271.9 511 59.7
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.8e-70 270.4 292 85.3
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.8e-69 267.7 463 62.6
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 5.3e-69 266.2 355 69.6
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 2.9e-67 260.4 488 59.0
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.0e-64 251.9 531 52.5
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 3.9e-64 250.0 489 56.6
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 7.1e-58 229.2 399 64.4
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 2.1e-57 227.6 417 57.8
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.7e-56 222.6 322 72.4
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 8.7e-56 222.2 292 80.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 3.8e-51 206.8 352 62.2
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 6.2e-46 189.5 299 55.9
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.4e-45 188.3 458 33.2
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.4e-45 187.6 411 56.4
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 3.4e-44 183.7 292 72.6
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.7e-43 181.4 331 66.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 2.9e-43 180.6 323 48.6
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.2e-42 177.2 333 63.1
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.7e-41 174.1 290 73.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 7.9e-41 172.6 216 53.7
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.3e-38 165.2 232 81.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.1e-37 162.2 119 82.4
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.1e-34 152.1 109 86.2
VMungo1080G1759 Vigna mungo HOM05D006454 ORTHO05D008024 3.4e-28 130.6 73 86.3
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 5.9e-28 129.8 235 73.6
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.7e-25 120.9 111 56.8
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.8e-21 108.2 396 47.0
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.0e-19 100.1 323 55.1
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-18 99.0 331 29.3
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 9.4e-18 95.9 322 50.9
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.4e-16 92.0 55 76.4
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.3e-16 91.3 401 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.9e-10 71.6 102 29.4
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 1.6e-09 68.6 120 47.5
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 4.0e-08 63.9 126 29.4


User provided reference genes

Program Settings