Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 5.4e-54 214.2 114 100.0
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 9.8e-48 193.4 114 88.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.4e-46 188.7 115 87.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.4e-46 188.7 110 88.2
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 9.2e-46 186.8 115 86.1
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 83.3
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 81.6
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 7.8e-45 183.7 112 85.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 7.8e-45 183.7 113 83.2
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 84.2
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 84.2
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.9e-44 181.4 115 83.5
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 82.5
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 81.6
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 81.6
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 78.9
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 78.1
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.5e-43 178.7 115 82.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 78.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.3e-43 178.3 110 83.6
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 78.9
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 81.6
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 79.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 81.6
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.9
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 79.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 78.9
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 78.9
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 81.6
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 81.2
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 80.9
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 80.0
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 77.2
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 79.1
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.1
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 77.2
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 80.4
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 77.2
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 77.2
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 79.5
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 76.3
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 77.2
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 74.6
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 4.0e-41 171.4 109 81.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 5.2e-41 171.0 113 77.0
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 76.8
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 75.4
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 77.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 77.2
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.2e-40 169.9 113 76.1
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.5e-40 169.5 115 76.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 78.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 76.3
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 76.3
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 76.3
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 75.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 78.9
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 78.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 75.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 75.0
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 75.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 75.4
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 75.4
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 74.6
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 74.6
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 75.4
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 76.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 74.6
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 4.9e-39 164.5 104 82.7
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 4.9e-39 164.5 115 75.7
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 73.7
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 73.7
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 6.4e-39 164.1 110 77.3
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 74.6
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 74.6
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 74.1
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 74.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 73.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 76.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.4e-38 162.2 108 76.9
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 73.7
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 5.4e-38 161.0 110 76.4
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.4e-38 161.0 106 76.4
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.1e-37 159.1 110 74.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 75.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.7e-37 158.7 114 72.8
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.7e-37 158.7 146 62.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 72.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 72.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 72.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 72.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 73.2
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.3e-36 155.6 114 73.7
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 3.9e-36 154.8 114 72.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.9e-36 154.8 114 71.9
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.1e-36 154.5 145 59.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 5.1e-36 154.5 104 76.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.6e-36 154.1 114 71.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 8.6e-36 153.7 114 71.9
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-35 153.3 110 72.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.9e-35 152.5 142 60.6
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 7.3e-35 150.6 109 72.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.3e-33 145.6 109 70.6
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 5.2e-33 144.4 80 92.5
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.4e-32 141.7 91 80.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.7e-31 139.4 80 87.5
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.4e-31 137.5 94 79.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.4e-30 135.6 77 90.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.2e-30 135.2 77 88.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-30 134.0 100 73.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 7.1e-30 134.0 84 82.1
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 3.5e-29 131.7 80 83.8
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 3.5e-29 131.7 80 83.8
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 7.8e-29 130.6 77 85.7
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 5.1e-28 127.9 107 62.6
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.7e-26 121.3 73 84.9
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-25 120.2 77 81.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.4e-25 119.0 65 90.8
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 5.2e-25 117.9 77 75.3
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.9e-22 109.4 106 51.9
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 3.2e-22 108.6 72 77.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 5.4e-22 107.8 99 59.6
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 4.6e-21 104.8 114 54.4
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 4.6e-21 104.8 112 51.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.8e-21 104.0 103 55.3
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-19 99.8 77 68.8
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-18 95.5 77 66.2
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.4e-17 93.2 109 45.9
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.1e-17 92.0 63 74.6
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-16 90.1 100 53.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.5e-16 89.7 86 54.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 1.3e-15 86.7 62 66.1
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.9e-15 85.5 51 86.3
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.8e-15 85.1 106 47.2
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.4e-14 83.2 104 46.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.4e-14 81.3 45 88.9
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 7.1e-14 80.9 106 44.3
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 7.1e-14 80.9 95 51.6
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-13 80.1 43 93.0
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.1e-13 79.3 57 71.9
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 50 80.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 43 88.4
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.8e-12 76.3 97 43.3
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-12 75.9 51 76.5
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.5e-11 73.2 99 48.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.5e-11 73.2 62 56.5
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.3e-11 72.0 43 83.7
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.3e-11 71.6 92 51.1
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 4.3e-11 71.6 55 67.3
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 2.8e-10 68.9 92 46.7
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 3.6e-10 68.6 95 47.4
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-09 67.0 60 61.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.9e-09 64.3 59 50.8


User provided reference genes

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