Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G271700 Phaseolus vulgaris HOM05D002739 ORTHO05D050259 4.9e-69 264.2 124 100.0
VMungo0647G0130 Vigna mungo HOM05D002739 ORTHO05D050259 9.0e-47 190.3 121 71.9
Lj4g0026950 Lotus japonicus HOM05D002739 ORTHO05D002877 1.7e-16 89.7 120 38.3
Lj1g0024813 Lotus japonicus HOM05D002739 ORTHO05D002877 4.8e-16 88.2 121 39.7
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.1e-12 77.0 113 34.5
TPR.G35352 Trifolium pratense HOM05D002739 ORTHO05D002877 2.5e-12 75.9 117 40.2
Rhsim07G0062000 Rhododendron simsii HOM05D002739 ORTHO05D002877 3.2e-12 75.5 115 33.9
Glyma.11G095900 Glycine max HOM05D002739 ORTHO05D002877 4.2e-12 75.1 112 33.0
Glyma.12G022000 Glycine max HOM05D002739 ORTHO05D002877 2.1e-11 72.8 112 30.4
Lj1g0028228 Lotus japonicus HOM05D002739 ORTHO05D002877 2.1e-11 72.8 113 34.5
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.1e-11 72.8 93 34.4
Actinidia19441 Actinidia chinensis HOM05D002739 ORTHO05D002877 3.6e-11 72.0 109 35.8
Phvul.011G024000 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 3.6e-11 72.0 115 32.2
TPR.G35351 Trifolium pratense HOM05D002739 ORTHO05D002877 3.6e-11 72.0 119 34.5
arahy.Tifrunner.gnm1.ann1.ZFJ3WN Arachis hypogaea HOM05D002739 ORTHO05D002877 4.7e-11 71.6 110 31.8
TPR.G22564 Trifolium pratense HOM05D002739 ORTHO05D002877 4.7e-11 71.6 116 31.9
Migut.D00796 Erythranthe guttata HOM05D002739 ORTHO05D002877 1.4e-10 70.1 96 32.3
Ca_11246_v3 Cicer arietinum L. HOM05D002739 ORTHO05D002877 1.8e-10 69.7 108 30.6
Atru.chr6.1312 Acer truncatum HOM05D002739 ORTHO05D002877 2.3e-10 69.3 109 33.0
arahy.Tifrunner.gnm1.ann1.YF5LNJ Arachis hypogaea HOM05D002739 ORTHO05D002877 2.3e-10 69.3 105 31.4
vmacro13721 Vaccinium macrocarpon HOM05D002739 ORTHO05D002877 2.3e-10 69.3 119 34.5
VMungo1127G0532 Vigna mungo HOM05D002739 ORTHO05D002877 2.3e-10 69.3 108 31.5
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.0e-10 68.9 116 30.2
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 3.0e-10 68.9 104 34.6
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 4.0e-10 68.6 114 30.7
Psat7g179880 Pisum sativum HOM05D002739 ORTHO05D002877 4.0e-10 68.6 108 31.5
Duzib168G0444 Durio zibethinus HOM05D002739 ORTHO05D002877 5.2e-10 68.2 108 29.6
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 6.8e-10 67.8 115 31.3
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 1.2e-09 67.0 108 29.6
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 1.5e-09 66.6 109 28.4
QL01p026935 Quercus lobata HOM05D002739 ORTHO05D002877 1.5e-09 66.6 110 30.0
Glyma.14G018900 Glycine max HOM05D002739 ORTHO05D002877 2.6e-09 65.9 106 35.8
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 3.4e-09 65.5 119 31.9
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 3.4e-09 65.5 106 29.2
Hund15707 Selenicereus undatus HOM05D002739 ORTHO05D002877 3.4e-09 65.5 112 30.4
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 7.5e-09 64.3 111 29.7
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 7.5e-09 64.3 118 31.4
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 7.5e-09 64.3 93 29.0
Sabra09G0035200 Salix brachista HOM05D002739 ORTHO05D002877 9.8e-09 63.9 109 33.0
Lsat_1_v5_gn_1_97381 Lactuca sativa HOM05D002739 ORTHO05D002877 1.3e-08 63.5 92 31.5
Sabra09G0035300 Salix brachista HOM05D002739 ORTHO05D002877 1.3e-08 63.5 109 33.0
Sabra09G0035400 Salix brachista HOM05D002739 ORTHO05D002877 1.3e-08 63.5 109 33.0
Sabra09G0035500 Salix brachista HOM05D002739 ORTHO05D002877 1.3e-08 63.5 109 33.0
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 1.7e-08 63.2 121 31.4
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 2.2e-08 62.8 118 31.4
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.2e-08 62.8 101 29.7
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 2.2e-08 62.8 119 28.6
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 2.8e-08 62.4 106 28.3
BcaB03g12794 Brassica carinata HOM05D002739 ORTHO05D002877 3.7e-08 62.0 118 29.7
Ciclev10017598m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.7e-08 62.0 108 31.5
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 3.7e-08 62.0 108 27.8
Oeu027475.1 Olea europaea HOM05D002739 ORTHO05D002877 4.9e-08 61.6 96 31.2
DCAR_022358 Daucus carota HOM05D002739 ORTHO05D002877 6.3e-08 61.2 101 29.7
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 6.3e-08 61.2 109 27.5
AT4G30880 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 8.3e-08 60.8 116 30.2
Aa31sc407G10 Aethionema arabicum HOM05D002739 ORTHO05D002877 1.1e-07 60.5 115 28.7
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 1.1e-07 60.5 92 32.6
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 1.1e-07 60.5 116 30.2
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 1.1e-07 60.5 118 30.5
Carub.0007s0690 Capsella rubella HOM05D002739 ORTHO05D002877 1.1e-07 60.5 86 33.7
SHI27456 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-07 60.5 89 32.6
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.1e-07 60.5 118 30.5
HPP92_003585 Vanilla planifolia HOM05D002739 ORTHO05D002877 1.1e-07 60.5 94 33.0
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.4e-07 60.1 113 33.6
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 1.4e-07 60.1 108 32.4
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 1.8e-07 59.7 112 32.1
Glyma.04G138700 Glycine max HOM05D002739 ORTHO05D002877 1.8e-07 59.7 116 28.4
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 1.8e-07 59.7 110 29.1
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.8e-07 59.7 107 29.9
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.4e-07 59.3 111 30.6
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 2.4e-07 59.3 91 31.9
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 3.1e-07 58.9 107 29.0
QL01p026933 Quercus lobata HOM05D002739 ORTHO05D002877 3.1e-07 58.9 107 29.0
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 3.1e-07 58.9 93 30.1
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 3.1e-07 58.9 109 30.3
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 4.1e-07 58.5 115 32.2
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 4.1e-07 58.5 115 32.2
BolC1t00795H Brassica oleracea HOM05D002739 ORTHO05D002877 4.1e-07 58.5 104 33.7
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 4.1e-07 58.5 115 32.2
Glyma.14G018800 Glycine max HOM05D002739 ORTHO05D002877 4.1e-07 58.5 117 34.2
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 4.1e-07 58.5 109 27.5
Cpa.g.sc1008.2 Carica papaya HOM05D002739 ORTHO05D002877 5.4e-07 58.2 85 37.6
CARHR238780 Cardamine hirsuta HOM05D002739 ORTHO05D002877 7.0e-07 57.8 107 29.9
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 7.0e-07 57.8 111 29.7
AUR62026811 Chenopodium quinoa HOM05D000453 ORTHO05D000387 7.0e-07 57.8 88 29.5
QL04p013238 Quercus lobata HOM05D002739 ORTHO05D002877 7.0e-07 57.8 89 31.5
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 7.0e-07 57.8 111 28.8
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 1.2e-06 57.0 107 29.0
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 1.2e-06 57.0 109 30.3
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 1.2e-06 57.0 109 30.3
Carub.0007s0967 Capsella rubella HOM05D002739 ORTHO05D002877 1.2e-06 57.0 107 28.0
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 1.2e-06 57.0 97 28.9
Aqoxy2G00281 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.6e-06 56.6 113 28.3
C03p88470 Brassica napus HOM05D002739 ORTHO05D002877 1.6e-06 56.6 109 30.3
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 1.6e-06 56.6 112 28.6
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.6e-06 56.6 75 34.7
PGR031G3191 Punica granatum HOM05D002739 ORTHO05D002877 2.7e-06 55.8 92 31.5
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.5e-06 55.5 116 26.7
Duzib168G0958 Durio zibethinus HOM05D002739 ORTHO05D002877 4.5e-06 55.1 113 31.0
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 4.5e-06 55.1 110 26.4
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 5.9e-06 54.7 107 27.1
BcaNung03432 Brassica carinata HOM05D002739 ORTHO05D002877 7.7e-06 54.3 103 30.1
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 7.7e-06 54.3 117 27.4
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 7.7e-06 54.3 110 29.1
Manes.14G006100 Manihot esculenta HOM05D002739 ORTHO05D002877 7.7e-06 54.3 109 25.7


User provided reference genes

Program Settings