Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 5.3e-66 255.4 289 100.0
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 3.1e-37 159.8 151 74.8
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 6.4e-35 152.1 152 74.3
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 2.7e-17 93.6 88 51.1
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 4.6e-17 92.8 96 45.8
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 8.6e-16 88.6 94 47.9
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 1.9e-15 87.4 100 47.0
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 5.6e-15 85.9 140 57.1
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 8.1e-14 82.0 101 42.6
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 1.4e-13 81.3 99 41.4
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.4e-13 81.3 148 49.3
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 2.4e-13 80.5 101 40.6
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 3.1e-13 80.1 105 41.0
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 3.1e-13 80.1 102 42.2
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 4.0e-13 79.7 97 41.2
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.2e-12 78.2 98 42.9
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 1.5e-12 77.8 102 40.2
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 2.0e-12 77.4 97 40.2
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 3.4e-12 76.6 89 47.2
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 7.6e-12 75.5 156 50.0
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 9.9e-12 75.1 96 39.6
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 1.3e-11 74.7 100 43.0
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-11 74.7 93 44.1
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-11 74.7 93 44.1
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 2.2e-11 73.9 90 43.3
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 6.4e-11 72.4 78 41.0
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 6.4e-11 72.4 69 49.3
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 8.4e-11 72.0 99 36.4
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.4e-10 70.5 52 55.8
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 3.2e-10 70.1 100 35.0
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 5.4e-10 69.3 100 39.0
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 5.4e-10 69.3 65 46.2
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 5.4e-10 69.3 98 41.8
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 9.3e-10 68.6 98 35.7
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 9.3e-10 68.6 95 38.9
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 1.2e-09 68.2 140 51.4
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 1.6e-09 67.8 99 36.4
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 2.7e-09 67.0 79 41.8
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 2.7e-09 67.0 48 52.1
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 3.5e-09 66.6 103 39.8
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 4.6e-09 66.2 145 51.0
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.0e-08 65.1 99 39.4
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.0e-08 65.1 94 39.4
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-08 64.7 94 39.4
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 1.3e-08 64.7 94 35.1
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 2.3e-08 63.9 100 39.0
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 2.3e-08 63.9 94 37.2
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 3.0e-08 63.5 82 40.2
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 3.9e-08 63.2 90 36.7
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 5.1e-08 62.8 97 41.2
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 8.7e-08 62.0 99 34.3
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 8.7e-08 62.0 49 53.1
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.1e-07 61.6 99 36.4
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 1.5e-07 61.2 68 41.2
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 1.5e-07 61.2 96 36.5
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 2.5e-07 60.5 75 38.7
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 2.5e-07 60.5 101 37.6
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 4.3e-07 59.7 99 35.4
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 5.6e-07 59.3 49 53.1
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 7.3e-07 58.9 91 37.4
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 7.3e-07 58.9 100 33.0
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.3e-06 58.2 95 34.7
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.3e-06 58.2 95 33.7
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 1.6e-06 57.8 49 49.0
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.6e-06 57.8 95 33.7
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-06 57.8 72 37.5
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.6e-06 57.8 93 36.6
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 4.8e-06 56.2 49 49.0
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 6.2e-06 55.8 85 37.6
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 6.2e-06 55.8 102 35.3


User provided reference genes

Program Settings