Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 2.5e-87 325.5 170 100.0
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.1e-76 290.0 175 89.1
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 8.2e-75 283.9 170 88.2
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 4.4e-68 261.5 172 82.0
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 2.3e-53 212.6 172 70.3
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 6.8e-53 211.1 175 72.6
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 8.9e-53 210.7 172 69.8
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 5.7e-52 208.0 170 65.9
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 7.5e-52 207.6 175 72.0
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.4e-50 203.4 179 69.8
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 3.9e-48 195.3 179 68.2
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 1.8e-45 186.4 170 60.6
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 5.2e-45 184.9 170 60.0
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 5.8e-44 181.4 170 60.6
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.3e-43 180.3 170 58.8
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.7e-43 179.9 171 58.5
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.7e-43 179.9 171 62.6
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 2.2e-43 179.5 170 60.0
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 2.9e-43 179.1 170 59.4
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 3.7e-43 178.7 171 60.2
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 4.9e-43 178.3 170 60.6
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 3.2e-42 175.6 171 59.6
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 5.4e-42 174.9 170 57.1
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.4e-42 174.9 170 57.1
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 7.0e-42 174.5 170 57.1
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.6e-41 173.3 170 57.1
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 7.8e-41 171.0 170 55.9
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.3e-40 170.2 168 57.1
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.7e-40 169.9 173 56.6
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.9e-39 166.4 172 55.8
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 2.5e-39 166.0 165 54.5
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 3.3e-39 165.6 168 52.4
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 9.5e-39 164.1 170 52.9
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 3.6e-38 162.2 171 56.1
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 3.6e-38 162.2 170 53.5
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 4.7e-38 161.8 180 58.9
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 6.2e-38 161.4 170 57.6
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 6.2e-38 161.4 169 56.2
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 6.8e-37 157.9 171 52.6
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 8.9e-37 157.5 170 55.3
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.2e-36 157.1 171 52.6
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.2e-36 157.1 170 52.4
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.5e-36 156.8 170 52.9
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.6e-36 156.0 171 55.6
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.6e-36 156.0 171 52.0
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 2.6e-36 156.0 172 52.9
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 5.8e-36 154.8 170 52.4
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.7e-35 153.3 170 50.6
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 4.9e-35 151.8 170 53.5
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 4.1e-34 148.7 168 54.8
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 2.3e-32 142.9 170 52.9
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 6.6e-32 141.4 170 49.4
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 1.9e-31 139.8 172 51.7
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.9e-31 139.8 171 49.1
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 2.5e-31 139.4 170 50.0
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 4.3e-31 138.7 168 55.4
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 4.3e-31 138.7 171 49.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 5.6e-31 138.3 169 49.7
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 7.3e-31 137.9 173 48.0
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 7.3e-31 137.9 173 48.0
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 7.3e-31 137.9 171 51.5
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 9.5e-31 137.5 169 52.1
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.2e-30 137.1 169 49.7
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.6e-30 136.7 165 53.3
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 2.1e-30 136.3 165 53.9
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.1e-29 134.0 174 51.7
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.1e-29 134.0 170 48.2
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 4.0e-29 132.1 167 44.9
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.4e-28 129.0 160 51.9
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 5.8e-28 128.3 170 43.5
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 1.7e-27 126.7 167 48.5
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.2e-27 126.3 172 45.3
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 8.4e-27 124.4 170 46.5
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 8.4e-27 124.4 170 42.9
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 4.1e-26 122.1 215 40.9
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 4.1e-26 122.1 170 42.4
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 5.4e-26 121.7 169 44.4
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 2.1e-25 119.8 215 40.9
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.7e-25 119.4 172 47.7
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 2.7e-25 119.4 171 43.3
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 3.5e-25 119.0 168 45.2
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 7.8e-25 117.9 170 41.8
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.3e-24 117.1 166 43.4
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 1.7e-24 116.7 192 41.7
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.7e-24 116.7 170 44.1
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 2.3e-24 116.3 192 41.7
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 2.3e-24 116.3 192 41.7
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 2.3e-24 116.3 192 41.7
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.3e-24 116.3 172 44.2
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 3.0e-24 115.9 192 41.1
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 5.1e-24 115.2 194 38.7
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 1.5e-23 113.6 222 38.7
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 5.6e-23 111.7 170 40.6
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.2e-22 110.5 165 49.7
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 2.8e-22 109.4 170 44.7
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 4.7e-22 108.6 173 43.9
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 6.2e-22 108.2 141 51.8
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 6.2e-22 108.2 192 37.5
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 8.1e-22 107.8 173 41.6
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 8.1e-22 107.8 168 41.7
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.1e-21 107.5 168 40.5
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 1.4e-21 107.1 192 37.0
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 2.4e-21 106.3 192 39.6
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.4e-21 106.3 173 46.2
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 3.1e-21 105.9 169 43.2
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 8.9e-21 104.4 168 40.5
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 8.9e-21 104.4 167 40.1
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 8.9e-21 104.4 173 45.1
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.2e-20 104.0 173 45.1
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.5e-20 103.6 129 52.7
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.5e-20 103.6 205 40.0
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.0e-20 103.2 172 43.6
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.4e-18 97.1 167 40.7
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.9e-18 96.7 172 38.4
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 1.9e-18 96.7 170 41.8
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.4e-18 96.3 174 39.1
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 4.2e-18 95.5 171 44.4
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 9.3e-18 94.4 181 36.5
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 1.6e-17 93.6 155 43.9
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.6e-17 93.6 154 38.3
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 1.6e-17 93.6 171 36.8
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.6e-17 93.6 170 41.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 6.0e-17 91.7 158 40.5
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 7.8e-17 91.3 157 36.3
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 1.3e-16 90.5 200 36.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 2.1e-14 83.2 163 37.4
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 2.1e-14 83.2 170 36.5
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 3.1e-13 79.3 169 37.9
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 5.3e-13 78.6 143 39.9
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.2e-11 73.2 153 37.9
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 7.1e-10 68.2 167 35.9
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 7.9e-09 64.7 142 35.2
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.6e-06 57.0 162 32.7
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.1e-06 56.6 162 30.9
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.7e-06 55.8 80 38.8
CSS0021487 Camellia sinensis var. sinensis HOM05D068293 ORTHO05D006851 6.2e-06 55.1 58 53.4


User provided reference genes

Program Settings