Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 7.0e-170 600.5 301 100.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.2e-158 560.8 301 92.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.4e-148 528.1 302 89.4
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.6e-148 527.3 298 89.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.4e-138 494.6 301 83.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.1e-135 486.9 297 82.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 7.4e-135 484.2 301 82.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 6.9e-133 477.6 303 81.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.1e-128 461.5 296 77.4
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.3e-126 456.8 296 79.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 6.9e-125 451.1 298 76.8
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 9.0e-125 450.7 296 78.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.2e-122 441.8 298 75.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.1e-121 439.5 297 76.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.1e-120 434.9 302 72.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.7e-120 434.5 282 77.3
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.3e-119 431.8 282 73.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 5.7e-119 431.4 302 72.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 7.4e-119 431.0 305 71.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.4e-119 431.0 304 71.7
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 9.7e-119 430.6 293 73.7
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.3e-118 430.3 262 79.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-118 429.9 306 72.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.2e-118 429.5 293 74.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.8e-118 428.3 273 76.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.8e-118 428.3 281 75.4
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.8e-118 428.3 281 75.4
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 6.3e-118 427.9 289 75.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 6.3e-118 427.9 275 74.5
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.1e-117 427.2 286 73.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-117 427.2 287 73.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.8e-117 426.4 286 73.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.1e-117 425.6 282 73.8
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.1e-117 425.2 291 72.9
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.1e-117 425.2 295 72.5
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.1e-117 425.2 293 73.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.3e-117 424.9 308 69.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.3e-117 424.9 291 73.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 5.9e-116 421.4 248 82.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.6e-116 421.0 242 81.0
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.0e-115 420.6 246 79.7
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.7e-115 419.9 310 69.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.2e-115 419.5 262 77.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.9e-115 419.1 291 71.8
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-115 419.1 247 78.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.9e-115 419.1 248 81.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.9e-115 419.1 248 80.6
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.9e-115 419.1 310 68.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.9e-115 419.1 310 69.0
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 5.0e-115 418.3 244 81.1
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.4e-114 416.8 251 76.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.5e-114 416.0 299 69.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.2e-114 415.2 252 78.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 4.2e-114 415.2 303 66.7
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 4.2e-114 415.2 263 75.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.2e-114 415.2 272 75.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 9.3e-114 414.1 291 72.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.2e-113 413.7 308 68.8
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-113 413.3 263 76.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.6e-113 413.3 245 79.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.6e-113 412.1 326 65.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 7.9e-113 411.0 246 80.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.0e-112 410.6 285 71.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.4e-112 410.2 302 70.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.0e-112 409.1 286 68.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.9e-112 408.7 276 73.2
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.5e-111 406.0 267 73.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.5e-111 406.0 318 65.4
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.5e-111 406.0 290 70.7
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.7e-111 404.8 257 75.9
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.7e-111 404.1 304 69.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.3e-110 403.7 242 77.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.7e-110 403.3 310 64.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.2e-110 402.9 251 76.5
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.2e-110 402.9 289 69.6
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.8e-110 402.5 241 77.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.8e-110 401.7 285 69.8
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.8e-109 399.8 242 77.3
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.1e-109 399.1 249 75.9
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.1e-109 398.7 273 71.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 9.1e-109 397.5 244 75.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.9e-107 392.5 244 74.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-107 392.5 280 70.0
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.8e-107 392.1 257 73.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.4e-106 390.2 244 73.8
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 9.4e-106 387.5 316 64.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.6e-105 386.7 274 70.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 4.7e-105 385.2 243 74.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 6.1e-105 384.8 290 69.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 7.9e-105 384.4 274 68.2
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-104 384.0 248 76.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.0e-104 382.5 302 66.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.5e-103 380.2 376 56.4
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-101 373.6 248 71.8
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.7e-99 366.7 289 66.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.4e-98 363.6 258 69.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.5e-98 362.8 276 67.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 2.5e-98 362.8 215 80.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.5e-95 353.6 419 50.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.6e-95 352.8 214 75.2
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.7e-94 349.0 307 63.5
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.1e-93 344.4 320 59.4
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.6e-92 343.6 274 62.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.9e-91 339.3 251 67.7
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.8e-91 339.0 248 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 5.0e-91 338.6 257 63.4
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.5e-87 327.0 214 76.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.5e-84 315.8 245 58.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 5.9e-84 315.1 243 65.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 9.8e-79 297.7 261 60.9
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.2e-78 296.6 231 64.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.1e-77 291.2 168 83.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.5e-76 289.3 249 57.0
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.6e-75 284.6 212 63.2
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 9.8e-71 271.2 176 75.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 2.4e-69 266.5 224 61.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.0e-69 265.0 164 76.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.3e-67 260.0 251 54.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.5e-66 257.3 237 51.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 6.1e-65 251.9 159 76.7
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 2.3e-64 250.0 143 83.9
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-59 233.0 191 63.4
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.3e-58 229.6 206 60.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-57 226.5 251 53.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-56 224.6 242 43.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-56 223.4 137 78.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.8e-56 221.9 140 77.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.4e-53 213.4 130 78.5
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.7e-51 207.2 238 45.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.2e-49 198.7 128 76.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-47 194.5 136 69.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.2e-47 194.5 136 69.1
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.0e-47 193.7 167 57.5
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.3e-46 191.0 111 77.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.2e-46 190.3 198 53.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.9e-46 189.1 111 78.4
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.1e-45 188.0 110 82.7
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.2e-45 186.4 127 70.9
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.9e-43 179.5 164 57.3
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.6e-41 174.1 174 55.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.6e-41 172.9 249 38.6
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 9.9e-39 164.9 219 41.6
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.9e-38 163.3 98 80.6
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 5.4e-37 159.1 112 66.1
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.6e-36 157.5 260 38.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-33 147.5 77 89.6
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.7e-33 146.0 82 76.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 5.8e-31 139.0 76 84.2
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.7e-30 137.5 74 79.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.1e-29 132.1 110 58.2
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.0e-27 128.3 67 86.6
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-23 113.6 56 85.7
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.6e-23 112.1 63 81.0
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 2.9e-22 110.2 242 31.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.4e-21 107.8 97 55.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-21 107.1 82 62.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 6.7e-19 99.0 56 80.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 8.1e-17 92.0 53 75.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.4e-16 91.3 97 53.6
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.6e-15 85.5 114 42.1
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-13 81.6 48 72.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.1e-13 79.0 62 51.6
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.9e-10 70.9 45 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.1e-09 67.4 102 38.2
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.8e-06 56.6 74 43.2


User provided reference genes

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