Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 2.1e-308 1061.6 564 100.0
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 3.3e-277 958.0 559 89.1
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 3.5e-263 911.4 562 85.2
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 8.6e-262 906.7 562 84.5
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 3.4e-250 868.2 564 80.9
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.9e-248 862.4 562 79.2
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 9.9e-242 840.1 556 75.7
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 5.1e-238 827.8 568 76.2
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 8.7e-238 827.0 564 76.4
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.3e-236 823.2 484 83.7
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 3.1e-235 818.5 559 76.2
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 5.3e-235 817.8 565 72.6
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 9.0e-235 817.0 558 74.4
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 2.1e-231 805.8 559 73.2
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 3.0e-230 802.0 558 72.8
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 2.4e-227 792.3 565 69.7
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 3.4e-226 788.5 564 75.2
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.3e-225 786.6 561 69.7
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.7e-225 786.2 557 68.9
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 3.8e-225 785.0 560 72.5
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 6.4e-225 784.3 559 70.8
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 3.2e-224 781.9 538 73.6
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 9.3e-224 780.4 559 71.7
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 1.6e-223 779.6 468 76.9
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 2.1e-223 779.2 568 69.9
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 1.3e-222 776.5 528 71.6
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.8e-222 776.2 528 73.5
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 3.0e-222 775.4 526 72.6
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.9e-222 775.0 549 70.5
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 1.1e-221 773.5 571 68.7
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.1e-221 773.5 560 69.8
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.3e-221 771.9 563 68.7
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 4.3e-221 771.5 565 72.4
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.1e-220 769.2 561 68.6
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 4.8e-220 768.1 563 69.3
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.8e-219 766.1 531 67.8
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 4.0e-219 765.0 556 67.8
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 2.0e-218 762.7 562 69.9
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 4.5e-218 761.5 629 64.2
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 4.5e-218 761.5 629 64.2
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 1.0e-217 760.4 536 68.7
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 1.3e-217 760.0 499 71.3
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.7e-217 759.6 553 71.6
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 2.9e-217 758.8 559 69.9
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.8e-217 758.4 568 68.0
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 8.4e-217 757.3 538 68.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.4e-216 756.5 562 68.7
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 1.9e-216 756.1 562 68.7
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 1.2e-215 753.4 553 71.8
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.3e-214 749.2 581 65.9
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 3.9e-214 748.4 553 66.0
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 3.3e-213 745.3 553 64.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 1.8e-211 739.6 560 66.2
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 9.0e-211 737.3 565 69.2
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 4.5e-210 734.9 538 70.1
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 7.6e-210 734.2 564 66.1
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.7e-209 733.0 538 66.2
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 2.7e-207 725.7 562 70.5
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 2.3e-206 722.6 566 67.5
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 1.9e-205 719.5 558 65.9
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 9.7e-205 717.2 484 69.8
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 2.8e-204 715.7 462 69.9
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 4.8e-204 714.9 564 63.7
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 2.4e-203 712.6 566 67.3
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 5.3e-203 711.4 565 61.9
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 8.8e-198 694.1 564 61.7
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.5e-197 693.3 506 68.2
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 9.7e-197 690.6 445 71.2
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 2.2e-196 689.5 487 65.3
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 2.2e-196 689.5 416 75.0
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 2.2e-196 689.5 436 72.7
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.8e-196 689.1 585 62.1
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 6.3e-196 688.0 658 56.7
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 4.1e-195 685.3 434 71.2
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.9e-193 679.1 508 68.3
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 3.2e-192 675.6 581 62.1
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.2e-191 673.7 494 65.2
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.0e-189 666.4 563 60.2
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 2.8e-188 662.5 449 66.4
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 3.1e-187 659.1 490 63.9
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 7.0e-187 657.9 500 62.0
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 4.2e-184 648.7 438 68.7
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 2.1e-183 646.4 491 63.3
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 2.7e-183 646.0 498 63.5
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 8.0e-183 644.4 577 60.0
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.0e-182 644.0 439 68.3
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 4.0e-182 642.1 491 62.9
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 8.8e-182 641.0 434 68.2
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.2e-181 640.6 497 63.0
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.2e-181 640.6 497 63.0
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 7.5e-181 637.9 494 62.6
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 7.5e-181 637.9 435 67.8
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 2.2e-180 636.3 567 55.7
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 2.9e-169 599.4 477 60.8
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 7.2e-168 594.7 563 57.5
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 4.5e-162 575.5 443 60.3
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 5.0e-161 572.0 493 54.0
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.4e-155 553.9 468 56.0
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 6.0e-154 548.5 362 72.4
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.5e-152 543.1 469 55.0
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 6.4e-140 501.9 563 49.4
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 9.9e-133 478.0 494 51.2
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.5e-98 363.2 257 71.2
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.3e-72 276.9 161 75.8
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 2.2e-55 221.1 300 43.0
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 6.3e-55 219.5 480 30.6
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 2.9e-52 210.7 141 64.5
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 8.9e-41 172.6 105 70.5
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 8.3e-39 166.0 124 64.5
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.4e-38 165.2 259 41.7
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 3.9e-36 157.1 133 62.4
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.1e-33 147.5 93 66.7
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 9.8e-32 142.5 105 67.6
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.1e-30 139.0 131 58.0
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 9.2e-30 136.0 131 57.3
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 6.4e-23 113.2 75 65.3
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.9e-22 111.7 61 82.0
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 9.9e-16 89.4 194 35.6
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.2e-14 84.3 336 23.8
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 4.2e-14 84.0 342 25.7
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 2.1e-13 81.6 68 63.2
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.5e-13 80.9 336 25.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.3e-12 79.0 327 25.1
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.7e-12 78.6 332 23.2
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.7e-12 78.6 331 23.9
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.3e-12 78.2 325 23.4
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 3.0e-12 77.8 377 23.9
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 3.9e-12 77.4 332 23.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.1e-11 75.9 328 24.7
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.1e-11 75.9 324 24.1
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.3e-11 74.3 307 26.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 5.6e-11 73.6 336 24.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 5.6e-11 73.6 334 24.0
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 9.6e-11 72.8 349 23.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.6e-10 72.0 339 23.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.1e-10 71.6 336 23.8
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.8e-10 70.5 242 26.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 6.2e-10 70.1 210 27.1
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 8.1e-10 69.7 248 24.6
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.4e-09 68.9 261 24.1
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.4e-09 68.9 357 24.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.4e-09 68.9 323 21.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.4e-09 68.2 248 25.8
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 2.4e-09 68.2 268 26.1
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 4.0e-09 67.4 341 23.2
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 4.0e-09 67.4 341 23.2
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.0e-09 67.4 210 28.6
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 5.3e-09 67.0 342 24.0
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 6.9e-09 66.6 341 23.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 9.0e-09 66.2 322 22.4
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 1.5e-08 65.5 48 58.3
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.4e-08 64.3 206 25.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.3e-07 62.4 341 21.7
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 6.4e-07 60.1 63 60.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 4.2e-06 57.4 242 24.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.2e-06 57.4 242 24.8
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.2e-06 57.4 242 24.8
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 5.4e-06 57.0 246 26.0


User provided reference genes

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