Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.6e-109 398.3 261 100.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 6.2e-98 361.3 259 91.9
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.6e-93 346.7 259 85.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 8.2e-90 334.3 259 81.1
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.4e-81 306.2 257 67.7
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.0e-80 303.1 258 70.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.9e-80 301.6 258 69.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-79 299.3 262 66.8
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.4e-78 297.0 259 68.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-78 296.2 259 67.6
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.1e-73 279.3 251 68.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.2e-72 277.3 259 61.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 2.2e-71 273.1 251 62.9
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.1e-70 270.8 248 62.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.4e-70 270.4 259 63.7
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.2e-69 267.3 256 60.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.6e-69 266.9 258 58.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.1e-69 266.5 248 58.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.7e-69 265.4 265 55.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.9e-69 264.6 254 54.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.0e-68 264.2 262 58.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.4e-68 263.8 252 59.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.4e-68 263.8 248 65.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.8e-68 263.5 259 61.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.3e-68 263.1 245 64.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.8e-68 261.2 248 61.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 8.8e-68 261.2 248 60.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.8e-68 261.2 248 60.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.0e-67 260.0 246 55.7
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.0e-67 260.0 247 61.5
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.0e-67 260.0 250 59.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.0e-67 260.0 256 52.7
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.6e-67 259.6 245 59.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.3e-67 259.2 246 54.9
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 3.3e-67 259.2 246 54.9
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.3e-67 259.2 247 61.9
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.4e-67 258.8 252 57.5
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 5.7e-67 258.5 246 58.5
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 5.7e-67 258.5 248 61.3
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 5.7e-67 258.5 248 63.3
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.4e-67 258.1 250 59.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 7.4e-67 258.1 247 61.1
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.3e-66 257.3 246 56.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-66 256.9 246 54.9
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.7e-66 256.9 248 58.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.2e-66 256.5 246 54.9
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.2e-66 256.5 254 55.5
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.8e-66 256.1 246 60.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.8e-66 256.1 166 71.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.8e-66 256.1 254 55.9
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.7e-66 255.8 253 59.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.8e-66 255.4 246 60.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 4.8e-66 255.4 248 54.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.8e-66 255.4 247 61.5
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 6.3e-66 255.0 248 56.9
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.3e-66 255.0 246 56.1
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.3e-66 255.0 250 59.2
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.3e-66 255.0 247 60.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 8.2e-66 254.6 250 58.8
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.2e-66 254.6 246 54.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.2e-66 254.6 246 54.5
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.1e-65 254.2 261 57.1
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.8e-65 253.4 251 53.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.4e-65 253.1 257 56.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.4e-65 253.1 248 60.1
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.1e-65 252.7 247 60.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.1e-65 252.3 248 52.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.1e-65 251.1 248 59.3
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 9.1e-65 251.1 250 51.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.6e-64 250.4 253 51.0
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-64 250.0 246 57.3
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-64 250.0 246 57.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.0e-64 250.0 248 62.9
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.0e-64 250.0 248 51.6
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 5.9e-64 248.4 261 53.6
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.0e-63 247.7 259 58.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.3e-63 247.3 258 51.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-63 246.9 254 56.3
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.2e-63 246.5 253 64.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.2e-63 246.5 254 57.9
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.9e-63 246.1 246 53.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.8e-63 245.7 248 52.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 6.5e-63 245.0 251 51.4
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.5e-63 245.0 168 68.5
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.5e-62 243.8 254 50.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.5e-62 243.0 254 50.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.2e-62 242.3 248 54.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.2e-62 241.5 248 53.6
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 9.4e-62 241.1 246 52.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 9.4e-62 241.1 254 57.1
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 9.4e-62 241.1 254 50.0
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.7e-61 239.6 248 56.5
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 3.6e-61 239.2 248 53.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 8.0e-61 238.0 248 52.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 8.0e-61 238.0 254 54.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-60 237.7 254 55.1
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.0e-60 236.1 254 57.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.0e-60 236.1 248 52.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 4.0e-60 235.7 171 64.3
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 5.2e-60 235.3 251 47.0
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.5e-59 233.8 261 55.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.6e-59 233.0 164 67.1
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.7e-59 231.9 246 49.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 5.7e-59 231.9 248 50.4
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-59 231.9 248 50.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-59 231.9 248 50.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.7e-58 230.3 291 51.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.7e-58 230.3 248 51.2
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.2e-58 229.9 248 50.0
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.3e-58 228.4 246 54.5
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.2e-58 228.0 246 52.8
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-57 227.3 247 49.8
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.4e-57 226.5 246 53.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.1e-57 225.7 247 54.7
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 5.3e-57 225.3 301 43.9
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.1e-57 224.6 248 52.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 9.1e-57 224.6 249 56.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 9.1e-57 224.6 250 52.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.2e-56 224.2 248 53.6
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.7e-55 220.3 234 50.9
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.0e-55 218.8 137 77.4
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 8.5e-55 218.0 133 76.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 8.5e-55 218.0 142 69.7
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.5e-55 218.0 245 54.7
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-54 216.9 252 53.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.2e-54 215.7 252 54.4
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 5.5e-54 215.3 270 57.0
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.2e-53 214.2 263 47.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.6e-53 213.8 248 57.3
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.1e-53 213.4 226 59.7
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.0e-52 211.1 245 49.8
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 6.8e-52 208.4 132 75.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 8.8e-52 208.0 136 69.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-51 204.5 264 45.5
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.2e-50 203.4 270 45.6
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.8e-50 202.2 248 44.0
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.8e-49 200.3 259 43.6
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 5.0e-47 192.2 130 69.2
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.2e-46 189.5 128 68.8
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.6e-45 186.0 165 60.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.8e-44 183.7 130 65.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.3e-44 183.3 131 64.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 4.4e-43 179.1 146 58.2
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 9.8e-43 177.9 123 68.3
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.6e-40 170.6 125 64.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.6e-39 164.9 142 52.8
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 3.3e-30 136.3 129 58.1
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.6e-30 135.6 84 71.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.2e-29 132.1 254 38.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.6e-27 126.7 94 62.8
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 4.1e-25 119.4 91 62.6
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 7.3e-22 108.6 109 50.5
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 7.3e-22 108.6 165 35.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.3e-20 103.6 167 35.9
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 9.8e-19 98.2 123 39.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.9e-18 96.7 102 45.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 3.2e-17 93.2 124 36.3
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.7e-16 90.1 77 55.8
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 4.3e-14 82.8 117 35.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.8e-12 77.4 129 51.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.5e-11 74.3 77 48.1
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 9.9e-11 71.6 77 48.1
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.9e-06 57.4 115 42.6
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 7.3e-06 55.5 56 48.2


User provided reference genes

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