Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 9.8e-102 373.6 210 100.0
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 8.0e-96 354.0 212 95.3
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 4.9e-93 344.7 208 93.3
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.1e-92 343.6 208 88.9
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 4.3e-81 305.1 204 77.5
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.6e-75 285.0 195 76.4
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.9e-73 279.6 210 71.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.3e-73 278.9 212 70.3
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.6e-72 275.4 216 68.5
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 4.7e-72 275.0 207 71.0
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 6.2e-72 274.6 209 70.3
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.8e-71 273.1 209 69.9
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.3e-71 272.7 208 68.3
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 3.1e-71 272.3 204 72.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.5e-70 270.0 207 68.6
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 2.0e-70 269.6 201 75.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 9.9e-70 267.3 212 66.0
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 3.7e-69 265.4 179 78.8
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 6.4e-69 264.6 216 64.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.4e-68 261.5 213 66.2
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 5.4e-68 261.5 178 77.5
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 9.2e-68 260.8 199 70.4
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-67 260.4 214 66.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.2e-67 260.4 208 67.8
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.7e-67 259.2 214 66.8
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 3.5e-67 258.8 208 65.9
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 6.0e-67 258.1 207 68.1
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.7e-66 256.5 208 66.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 6.6e-66 254.6 201 67.7
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.5e-65 253.4 218 63.3
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 7.3e-65 251.1 209 65.6
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 7.3e-65 251.1 208 69.2
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.6e-64 250.0 188 70.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.6e-64 250.0 207 66.7
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.1e-64 249.6 215 63.3
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-63 247.3 212 61.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.4e-63 246.9 200 65.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.8e-63 246.5 215 66.5
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.1e-63 245.7 213 62.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.1e-63 245.7 207 65.2
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 3.1e-63 245.7 205 65.9
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 4.0e-63 245.4 207 66.7
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 5.2e-63 245.0 207 66.7
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 5.2e-63 245.0 210 63.3
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.2e-63 245.0 212 68.9
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.8e-63 244.6 220 65.5
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.0e-62 243.0 209 65.6
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.6e-62 242.7 210 60.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.4e-62 242.3 203 65.0
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.4e-62 242.3 203 65.0
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 3.4e-62 242.3 210 61.4
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 7.6e-62 241.1 207 63.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 7.6e-62 241.1 207 61.8
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.6e-62 241.1 211 60.2
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.6e-62 241.1 214 59.8
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 7.6e-62 241.1 210 64.3
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 9.9e-62 240.7 204 65.2
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 9.9e-62 240.7 171 72.5
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 9.9e-62 240.7 202 65.3
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-61 240.4 214 59.3
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.3e-61 240.4 203 64.0
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.3e-61 240.4 215 60.5
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-61 240.4 201 67.2
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.3e-61 240.4 217 68.7
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.7e-61 240.0 180 70.0
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.2e-61 239.6 200 63.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 2.2e-61 239.6 205 65.9
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 4.9e-61 238.4 203 64.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 4.9e-61 238.4 199 64.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 8.4e-61 237.7 207 63.3
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 8.4e-61 237.7 204 64.7
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.4e-60 236.9 190 66.8
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-60 236.5 225 59.1
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.4e-60 236.1 197 64.0
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.2e-60 235.7 215 60.9
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.2e-60 235.7 205 62.4
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 3.2e-60 235.7 200 63.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 3.2e-60 235.7 205 65.4
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 4.2e-60 235.3 207 63.3
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 5.4e-60 235.0 198 61.6
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 5.4e-60 235.0 199 62.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 5.4e-60 235.0 198 63.1
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 7.1e-60 234.6 209 62.2
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 7.1e-60 234.6 209 62.2
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.2e-59 233.8 214 60.3
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-59 233.8 184 70.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.6e-59 233.4 216 57.4
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.6e-59 233.4 215 60.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.1e-59 233.0 139 85.6
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 3.5e-59 232.3 215 60.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.5e-59 232.3 198 63.6
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 3.5e-59 232.3 139 84.9
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.0e-58 230.7 202 61.4
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.0e-58 230.7 243 58.8
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.3e-58 230.3 215 58.6
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.7e-58 229.9 139 81.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.3e-58 229.6 210 60.5
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 3.9e-58 228.8 139 81.3
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.5e-57 226.1 207 62.3
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.5e-57 226.1 180 68.9
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 7.3e-57 224.6 193 63.2
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.6e-56 223.4 139 79.1
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.8e-56 222.6 144 81.2
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.8e-56 222.6 210 59.5
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 8.1e-56 221.1 201 59.2
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 8.1e-56 221.1 133 82.7
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 3.1e-55 219.2 140 79.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 9.0e-55 217.6 180 65.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.4e-54 215.7 139 80.6
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.3e-53 213.8 142 73.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.9e-53 211.8 206 60.7
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 6.4e-53 211.5 203 61.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.6e-51 206.8 132 80.3
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.6e-51 206.8 198 61.1
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.7e-50 203.4 141 74.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.3e-50 203.0 200 56.5
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.9e-49 199.9 204 59.8
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 4.8e-48 195.3 196 57.1
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.4e-47 193.7 128 78.1
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 9.9e-46 187.6 143 69.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.7e-43 179.5 133 69.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.5e-41 172.9 130 69.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 5.6e-41 171.8 128 67.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.2e-40 168.3 133 64.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.4e-39 166.4 133 64.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 5.3e-39 165.2 186 50.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.5e-33 147.1 213 44.6
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.7e-33 145.2 110 68.2
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.3e-32 144.1 146 55.5
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 3.1e-31 139.4 201 48.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-30 137.5 137 54.7
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 3.2e-28 129.4 71 88.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.4e-23 114.0 77 76.6
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-22 110.5 67 82.1
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-22 110.5 67 82.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 8.8e-18 94.7 70 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 9.7e-17 91.3 70 70.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 4.2e-12 75.9 45 86.7
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 8.8e-10 68.2 138 34.1


User provided reference genes

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