Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 0.0e+00 1224.9 653 100.0
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 4.3e-305 1050.8 664 85.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.1e-239 833.6 718 71.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 5.9e-222 774.6 703 70.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 9.3e-159 564.7 746 55.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.6e-142 509.2 737 52.5
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.0e-141 508.1 745 50.3
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 8.7e-141 505.0 752 50.3
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.2e-137 494.6 748 50.9
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.5e-132 476.9 751 51.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-130 471.5 728 50.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.0e-129 467.2 788 48.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 7.9e-126 455.3 788 47.0
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 8.8e-125 451.8 764 47.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.1e-119 434.9 734 48.9
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 8.8e-117 425.2 743 45.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.4e-116 422.9 736 47.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 4.1e-114 416.4 749 46.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.3e-114 416.0 770 45.1
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.5e-112 409.1 656 50.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.5e-112 409.1 745 45.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-110 404.8 669 48.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.7e-110 403.7 719 47.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.7e-110 402.9 666 50.0
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.6e-108 397.1 744 44.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.4e-108 396.7 773 43.3
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.3e-107 394.8 756 44.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.8e-107 393.7 661 48.0
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.8e-107 392.9 734 46.6
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.3e-107 392.5 713 46.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 6.3e-107 392.5 653 48.4
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.1e-106 390.2 713 46.6
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.1e-106 390.2 713 46.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-105 387.5 653 46.9
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.0e-104 385.2 711 45.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.2e-104 384.0 753 44.9
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.8e-104 383.3 701 46.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-102 378.3 724 45.2
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 4.7e-102 376.3 753 44.2
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 6.1e-102 375.9 661 46.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.0e-101 375.2 745 44.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.4e-100 369.8 728 44.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 8.3e-99 365.5 723 44.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.3e-99 365.5 716 44.0
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.1e-98 363.2 718 45.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.2e-97 361.7 658 45.4
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.9e-96 357.1 756 41.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 6.6e-96 355.9 724 43.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.5e-95 354.0 699 44.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.5e-95 354.0 735 41.6
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.8e-94 350.5 678 43.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.2e-92 345.1 747 43.6
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.0e-92 344.4 666 47.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.0e-92 344.4 652 45.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.7e-92 342.8 676 42.8
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.3e-91 339.3 662 45.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.4e-90 338.2 764 41.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 8.0e-86 322.4 746 40.6
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.3e-85 320.9 766 39.3
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.5e-79 300.8 705 41.1
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 4.3e-79 300.1 569 45.3
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 5.6e-79 299.7 771 37.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.6e-78 298.1 689 40.3
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 6.2e-78 296.2 780 38.7
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 8.1e-78 295.8 770 38.2
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.5e-76 291.6 624 42.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.0e-76 291.2 699 41.8
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.6e-76 290.8 708 41.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.7e-75 287.0 704 39.2
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.9e-75 286.6 759 38.3
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-74 285.4 654 43.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.1e-74 283.5 721 39.0
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.7e-73 280.8 682 40.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.5e-73 280.4 695 39.4
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 4.6e-73 280.0 691 41.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 6.0e-73 279.6 694 40.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 6.0e-73 279.6 646 39.9
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.0e-73 279.6 719 38.4
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 7.8e-73 279.3 636 41.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.3e-72 278.5 675 40.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 5.6e-71 273.1 695 39.0
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.1e-69 267.3 605 41.2
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.0e-69 266.9 753 37.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.0e-68 264.6 658 39.1
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 7.8e-65 252.7 669 39.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.1e-63 248.8 474 43.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-61 241.9 693 36.9
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 8.9e-61 239.2 769 35.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.2e-60 238.8 615 37.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.9e-59 233.4 772 35.2
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 8.4e-59 232.6 628 37.6
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.4e-58 229.9 699 36.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 9.3e-58 229.2 717 36.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.5e-57 227.3 435 46.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.3e-56 224.6 639 36.3
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 8.7e-56 222.6 672 37.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 3.3e-55 220.7 675 37.5
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 7.3e-55 219.5 630 37.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-54 218.8 616 37.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-54 218.4 745 34.5
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.1e-54 218.0 603 38.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.2e-54 216.5 708 36.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.2e-54 216.5 724 34.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.1e-53 215.7 720 34.2
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.4e-53 214.5 715 35.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 4.0e-53 213.8 670 34.3
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.0e-53 213.8 717 33.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.0e-53 213.8 688 35.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 5.3e-53 213.4 666 35.3
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-52 212.2 579 38.5
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.2e-51 208.0 568 40.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.9e-51 207.6 697 33.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.8e-51 207.2 727 34.3
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.9e-51 206.8 698 33.5
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.4e-51 206.5 718 34.3
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-49 201.4 667 34.3
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-49 201.1 652 33.9
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.5e-49 200.7 264 51.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.6e-49 200.3 688 35.2
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.0e-49 199.9 582 37.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.0e-49 199.9 684 34.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-48 198.7 686 34.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.7e-48 198.4 718 34.0
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 5.1e-48 196.8 647 34.3
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.6e-48 196.4 631 34.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.0e-44 184.9 580 35.5
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.0e-44 184.9 698 34.5
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 9.9e-44 182.6 737 32.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 2.2e-43 181.4 577 36.0
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.9e-43 181.0 386 42.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.9e-43 181.0 442 41.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.9e-43 180.3 325 46.8
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 5.5e-42 176.8 623 35.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.3e-39 167.5 389 41.9
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-38 165.6 625 32.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.4e-37 162.2 246 48.4
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-35 155.6 679 29.7
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.9e-35 153.7 681 30.1
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.9e-33 146.4 411 38.2
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.3e-32 145.6 672 32.6
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.3e-32 145.6 584 33.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.4e-31 139.8 801 27.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.8e-30 137.9 119 65.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-29 136.0 455 32.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.4e-29 134.8 194 46.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.8e-28 130.2 673 30.2
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.5e-26 124.8 144 56.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.1e-25 121.7 498 30.7
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-25 121.7 498 30.7
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.6e-25 120.6 144 54.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 3.0e-24 117.9 469 31.6
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 4.3e-23 114.0 460 33.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 9.7e-23 112.8 523 30.6
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-21 108.6 122 54.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.1e-21 107.5 355 36.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.9e-20 103.6 573 29.5
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.0e-19 100.5 456 29.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 9.4e-18 96.3 301 35.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.3e-15 87.8 97 53.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.4e-13 81.6 150 47.3
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.2e-12 79.3 113 54.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-12 79.0 274 33.2
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 7.7e-12 76.6 148 49.3
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-11 75.5 321 32.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.2e-11 75.1 228 35.1
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 4.2e-10 70.9 93 50.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.6e-09 68.9 225 32.0
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 3.6e-09 67.8 617 25.9
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.3e-08 65.1 533 28.0
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.0e-08 64.7 58 60.3
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 8.8e-08 63.2 113 46.0
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-07 62.8 88 54.5
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 5.7e-07 60.5 104 48.1


User provided reference genes

Program Settings