Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.2e-210 735.3 365 100.0
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 5.5e-201 704.1 365 95.6
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.8e-183 646.0 371 88.1
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.6e-179 632.9 376 85.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 7.0e-164 580.9 370 76.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.8e-159 566.2 372 76.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.0e-154 550.4 374 73.8
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.1e-153 547.0 372 72.8
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.5e-153 546.6 378 72.5
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 8.9e-151 537.3 384 70.6
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 2.5e-145 519.2 372 72.3
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.3e-145 518.8 369 68.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 4.3e-145 518.5 369 69.4
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 7.3e-145 517.7 369 67.8
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 9.5e-145 517.3 369 67.5
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 8.0e-144 514.2 369 67.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 9.8e-142 507.3 373 67.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.6e-138 494.2 369 66.9
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 5.6e-137 491.5 370 65.7
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 2.1e-136 489.6 369 65.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 3.6e-136 488.8 369 65.3
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 2.3e-135 486.1 376 64.4
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 9.9e-134 480.7 373 64.6
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.2e-133 479.6 369 64.5
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.2e-133 479.6 369 65.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.9e-133 479.2 371 64.2
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.9e-133 479.2 370 64.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 4.9e-133 478.4 369 65.6
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.6e-131 473.4 379 64.1
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.7e-131 472.6 369 64.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 4.6e-131 471.9 369 64.8
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 6.0e-131 471.5 368 64.4
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 2.3e-130 469.5 369 64.8
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 6.6e-130 468.0 362 65.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.5e-129 466.8 374 63.1
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-129 466.8 369 63.4
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.9e-129 466.5 369 64.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.3e-129 465.7 374 62.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.3e-129 465.3 374 63.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 4.3e-129 465.3 369 63.4
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.6e-129 464.2 369 63.1
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.6e-129 464.2 369 63.1
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.6e-129 464.2 369 63.1
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 9.6e-129 464.2 374 62.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.6e-128 463.4 375 60.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.6e-128 463.4 371 63.3
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.8e-128 462.6 369 62.6
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 5.2e-127 458.4 372 62.6
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.8e-126 454.9 373 61.4
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 7.6e-126 454.5 379 61.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.2e-125 453.0 370 60.0
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.1e-123 446.4 377 60.2
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.5e-123 445.7 377 59.9
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.1e-122 441.8 371 62.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-122 441.8 377 59.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 3.3e-121 439.1 369 60.7
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.6e-121 438.3 380 60.8
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.3e-121 438.0 373 59.8
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 9.6e-121 437.6 373 61.1
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 9.6e-121 437.6 373 61.1
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.3e-120 437.2 373 60.9
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.8e-120 436.0 373 60.3
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.8e-120 436.0 380 60.5
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.8e-120 436.0 371 61.2
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 3.6e-120 435.6 371 61.2
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.6e-120 435.6 373 59.5
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 8.1e-120 434.5 372 61.0
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.8e-119 433.3 367 61.6
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.8e-119 433.3 374 60.4
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-119 433.0 372 61.0
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.4e-119 433.0 373 59.2
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.4e-119 433.0 370 60.8
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.4e-119 433.0 371 61.2
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 4.0e-119 432.2 370 61.1
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 6.9e-119 431.4 371 60.6
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 9.0e-119 431.0 374 59.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 3.4e-118 429.1 372 60.8
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.4e-118 428.7 372 59.4
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.4e-118 428.7 373 59.0
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.3e-117 427.2 377 59.2
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.2e-117 426.4 368 59.2
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.9e-117 426.0 383 58.7
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.8e-117 425.6 378 59.8
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.4e-116 423.7 376 59.8
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 9.3e-116 421.0 371 60.4
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.1e-115 419.9 367 60.8
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.5e-115 419.1 384 58.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.7e-114 416.8 367 59.1
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 8.7e-114 414.5 369 58.8
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.5e-113 412.9 367 59.4
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.3e-113 412.5 377 58.6
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.3e-113 412.1 354 60.2
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.1e-111 407.5 368 57.6
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.4e-111 406.4 378 56.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 7.6e-110 401.4 370 57.6
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.9e-110 401.0 371 57.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.2e-109 399.8 354 55.9
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 8.4e-109 397.9 370 56.8
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 8.4e-109 397.9 356 57.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.4e-108 395.2 371 54.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.6e-105 385.2 358 53.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-100 370.5 368 53.8
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.7e-97 358.6 336 55.1
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 7.4e-97 358.2 336 55.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.6e-94 349.7 457 43.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 6.5e-93 345.1 369 49.9
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.1e-92 344.4 368 49.2
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.8e-90 337.0 368 49.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.2e-86 324.3 295 54.2
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.5e-84 316.6 368 46.2
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.3e-81 306.2 281 55.5
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.3e-80 304.3 352 47.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.3e-79 298.9 376 44.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.4e-71 274.2 342 45.0
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.6e-67 259.6 342 42.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 6.1e-67 258.8 360 40.6
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.1e-65 254.6 369 39.3
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.5e-61 238.8 232 55.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 4.0e-58 229.6 212 56.1
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 5.7e-57 225.7 201 55.2
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.8e-55 220.7 182 61.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.8e-50 204.1 176 59.7
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.4e-47 193.7 282 36.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.1e-43 180.6 241 41.1
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.2e-41 174.9 158 55.1
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 4.9e-40 169.5 299 32.8
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 4.1e-39 166.4 140 57.1
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 7.0e-39 165.6 152 53.3
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.0e-38 164.1 137 56.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 3.6e-35 153.3 105 69.5
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-34 151.4 152 52.0
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 3.0e-29 133.7 239 42.7
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.1e-27 127.5 115 53.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.1e-26 125.2 95 58.9
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.1e-26 123.6 115 51.3
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.8e-25 119.4 100 54.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.9e-24 117.1 109 55.0
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-22 111.7 105 51.4
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.3e-21 108.2 289 26.6
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 6.8e-18 95.9 89 61.8
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 7.6e-17 92.4 98 54.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 7.6e-17 92.4 98 54.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.2e-16 90.9 92 48.9
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.9e-12 77.8 45 84.4
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.2e-11 75.1 112 49.1
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.2e-11 72.8 79 51.9
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 2.4e-10 70.9 78 44.9
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 3.1e-10 70.5 58 65.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.5e-09 68.2 65 53.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.8e-09 66.2 73 50.7


User provided reference genes

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