Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 3.0e-25 118.2 85 100.0
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 2.5e-24 115.2 85 95.3
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 3.3e-24 114.8 85 85.9
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 4.3e-24 114.4 85 96.5
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 4.3e-24 114.4 85 72.9
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.8e-23 111.7 85 81.2
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.8e-23 111.7 85 81.2
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 8.2e-23 110.2 85 81.2
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 1.4e-22 109.4 85 85.9
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 2.4e-22 108.6 85 82.4
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 4.0e-22 107.8 85 68.2
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 4.0e-22 107.8 85 68.2
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 4.0e-22 107.8 85 68.2
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 9.0e-22 106.7 85 67.1
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 5.8e-21 104.0 83 84.3
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 5.8e-21 104.0 85 64.7
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 7.6e-21 103.6 85 62.4
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 7.6e-21 103.6 85 63.5
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 1.7e-20 102.4 85 63.5
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 1.7e-20 102.4 85 63.5
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 2.2e-20 102.1 85 72.9
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 3.8e-20 101.3 86 64.0
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 6.5e-20 100.5 83 63.9
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 6.5e-20 100.5 83 63.9
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 8.4e-20 100.1 85 63.5
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.1e-19 99.8 84 61.9
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 1.1e-19 99.8 85 62.4
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.4e-19 99.4 83 81.9
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 2.5e-19 98.6 85 62.4
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 2.5e-19 98.6 85 62.4
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 3.2e-19 98.2 83 61.4
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 3.2e-19 98.2 83 77.1
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 4.2e-19 97.8 83 62.7
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 5.5e-19 97.4 83 60.2
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 7.1e-19 97.1 84 59.5
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 7.1e-19 97.1 83 63.9
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 7.1e-19 97.1 85 65.9
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 7.1e-19 97.1 83 61.4
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 7.1e-19 97.1 83 61.4
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 7.1e-19 97.1 83 61.4
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 9.3e-19 96.7 79 67.1
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 9.3e-19 96.7 84 59.5
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 9.3e-19 96.7 86 75.6
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.2e-18 96.3 85 57.6
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 1.2e-18 96.3 85 58.8
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 2.1e-18 95.5 85 61.2
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 1.0e-17 93.2 83 74.7
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 1.0e-17 93.2 92 67.4
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.3e-17 92.0 82 62.2
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.3e-17 92.0 82 62.2
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 2.3e-17 92.0 82 62.2
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 3.9e-17 91.3 86 59.3
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 5.1e-17 90.9 84 60.7
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 8.7e-17 90.1 86 60.5
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 8.7e-17 90.1 86 60.5
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 1.5e-16 89.4 85 55.3
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 1.9e-16 89.0 85 58.8
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 2.5e-16 88.6 86 58.1
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 2.5e-16 88.6 77 61.0
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 3.3e-16 88.2 85 57.6
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 3.3e-16 88.2 85 57.6
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 4.3e-16 87.8 85 54.1
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 4.3e-16 87.8 85 58.8
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 5.7e-16 87.4 85 55.3
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 5.7e-16 87.4 83 59.0
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 9.7e-16 86.7 86 67.4
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 9.7e-16 86.7 82 56.1
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 9.7e-16 86.7 82 78.0
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.3e-15 86.3 74 62.2
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 1.6e-15 85.9 82 57.3
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 2.2e-15 85.5 85 52.9
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 2.2e-15 85.5 85 65.9
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 4.8e-15 84.3 83 53.0
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 4.8e-15 84.3 74 60.8
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 4.8e-15 84.3 83 54.2
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 4.8e-15 84.3 82 54.9
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 6.3e-15 84.0 82 54.9
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 6.3e-15 84.0 82 54.9
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 6.3e-15 84.0 83 53.0
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 6.3e-15 84.0 83 54.2
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 8.2e-15 83.6 83 53.0
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 8.2e-15 83.6 83 53.0
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 1.1e-14 83.2 82 57.3
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 1.1e-14 83.2 82 53.7
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 1.1e-14 83.2 82 70.7
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 1.4e-14 82.8 82 54.9
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 1.4e-14 82.8 82 67.1
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 1.4e-14 82.8 85 72.9
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 1.4e-14 82.8 83 54.2
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 1.8e-14 82.4 83 49.4
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 2.4e-14 82.0 82 52.4
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 2.4e-14 82.0 85 55.3
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 2.4e-14 82.0 72 59.7
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 2.4e-14 82.0 82 56.1
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 2.4e-14 82.0 82 54.9
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 3.1e-14 81.6 82 58.5
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 3.1e-14 81.6 77 79.2
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 3.1e-14 81.6 82 53.7
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 4.1e-14 81.3 82 54.9
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 4.1e-14 81.3 85 74.1
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 5.3e-14 80.9 82 53.7
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 5.3e-14 80.9 82 62.2
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 5.3e-14 80.9 82 73.2
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 54.9
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 63.4
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 63.4
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 63.4
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 63.4
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 63.4
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 6.9e-14 80.5 85 50.6
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 6.9e-14 80.5 83 51.8
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 6.9e-14 80.5 82 68.3
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 6.9e-14 80.5 85 75.3
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 9.0e-14 80.1 85 55.3
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 9.0e-14 80.1 82 53.7
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 1.5e-13 79.3 82 52.4
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 1.5e-13 79.3 82 51.2
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 2.0e-13 79.0 78 51.3
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 2.0e-13 79.0 82 52.4
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 2.6e-13 78.6 82 48.8
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 2.6e-13 78.6 82 48.8
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 2.6e-13 78.6 82 48.8
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 2.6e-13 78.6 82 48.8
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 2.6e-13 78.6 82 48.8
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 2.6e-13 78.6 85 54.1
TAR629G2979 Trochodendron aralioides HOM05D003685 ORTHO05D003168 2.6e-13 78.6 85 72.9
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 70.1
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 70.1
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 70.1
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 70.1
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 70.1
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 8.5e-12 73.6 85 49.4
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 8.5e-12 73.6 82 50.0
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 8.5e-12 73.6 77 68.8
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 48.8
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 1.1e-11 73.2 77 48.1
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 1.4e-11 72.8 82 51.2
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 1.4e-11 72.8 79 73.4
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 1.9e-11 72.4 85 68.2
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 1.9e-11 72.4 76 68.4
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 4.2e-11 71.2 82 61.0
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 9.4e-11 70.1 85 65.9
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 9.4e-11 70.1 79 69.6
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 9.4e-11 70.1 79 69.6
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 4.6e-10 67.8 85 49.4
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 2.3e-09 65.5 66 53.0
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 2.3e-09 65.5 77 64.9
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 5.1e-09 64.3 85 44.7
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 5.1e-09 64.3 74 66.2
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 8.8e-09 63.5 82 46.3
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.1e-08 63.2 76 42.1
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 2.5e-08 62.0 77 67.5
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 7.4e-08 60.5 76 44.7
ClCG05G011030 Citrullus lanatus HOM05D003685 ORTHO05D003168 1.7e-07 59.3 85 64.7
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 1.7e-07 59.3 82 45.1
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 2.2e-07 58.9 76 44.7
ClCG08G003720 Citrullus lanatus HOM05D003685 ORTHO05D003168 2.8e-07 58.5 82 42.7
Sabra04G0059800 Salix brachista HOM05D003685 ORTHO05D003168 2.8e-07 58.5 45 66.7
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 3.7e-07 58.2 82 40.2
Lalb_Chr12g0209331 Lupinus albus HOM05D003685 ORTHO05D003168 4.8e-07 57.8 76 42.1
Nn4g24200 Nelumbo nucifera HOM05D003685 ORTHO05D003168 6.3e-07 57.4 77 70.1
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 8.2e-07 57.0 75 42.7
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 8.2e-07 57.0 75 42.7
MELO3C020277.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.1e-06 56.6 85 63.5
CsaV3_3G021560 Cucumis sativus L. HOM05D003685 ORTHO05D003168 1.1e-06 56.6 85 62.4
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.4e-06 56.2 71 46.5
Sed0015058 Sechium edule HOM05D003685 ORTHO05D003168 1.4e-06 56.2 82 63.4
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 2.4e-06 55.5 79 43.0
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 3.1e-06 55.1 82 47.6
Lalb_Chr07g0187881 Lupinus albus HOM05D003685 ORTHO05D003168 6.9e-06 53.9 74 39.2


User provided reference genes

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