Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 5.0e-271 937.2 475 100.0
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 4.1e-241 837.8 475 87.8
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.9e-239 831.2 475 87.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 8.9e-228 793.5 476 85.5
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 7.4e-214 747.3 475 77.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 4.6e-200 701.4 477 74.8
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.9e-199 698.4 474 74.7
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 2.1e-197 692.6 478 73.8
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.8e-191 672.9 475 71.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 8.7e-191 670.6 478 72.2
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.6e-189 666.4 475 70.7
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 4.8e-189 664.8 475 70.7
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.7e-181 638.6 465 68.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 2.4e-180 636.0 466 67.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 6.5e-178 627.9 465 66.7
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 7.4e-174 614.4 466 65.5
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 9.7e-174 614.0 473 64.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 2.2e-173 612.8 465 66.0
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.4e-172 610.1 467 64.9
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 9.1e-172 607.4 464 66.2
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.6e-171 606.7 463 65.2
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.7e-170 603.2 462 65.2
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 5.0e-170 601.7 467 65.3
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.9e-169 599.7 465 64.1
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.2e-169 599.0 466 64.6
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 7.2e-169 597.8 426 69.7
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.7e-168 595.9 465 64.3
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.7e-166 587.4 462 64.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.8e-165 585.9 465 63.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.8e-165 585.1 516 59.7
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.1e-164 582.0 463 64.8
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.3e-162 577.0 466 63.7
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.7e-162 576.6 465 63.4
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.9e-161 573.2 465 62.6
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 5.5e-161 571.6 464 60.3
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.7e-160 569.3 463 63.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.2e-159 565.1 461 63.8
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 7.5e-158 561.2 462 60.4
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.4e-156 557.0 462 60.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 1.4e-156 557.0 465 60.9
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.4e-156 555.1 436 63.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.1e-156 554.3 436 63.1
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.5e-155 552.4 465 60.2
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.7e-154 550.1 466 60.5
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.7e-154 550.1 466 60.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.9e-154 549.3 464 60.3
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.5e-154 548.1 466 60.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.5e-153 545.0 465 59.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 7.2e-153 544.7 463 60.7
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 9.5e-153 544.3 466 60.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.6e-152 543.5 464 59.9
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.1e-152 543.1 463 56.2
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.8e-151 540.0 465 60.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.4e-150 535.8 465 59.8
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 4.4e-150 535.4 462 57.1
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 4.9e-149 531.9 498 56.2
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.8e-148 530.0 463 57.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 4.5e-147 525.4 463 58.7
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 7.3e-145 518.1 463 54.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.2e-144 517.3 465 56.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.3e-143 513.1 463 56.8
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 3.0e-143 512.7 464 55.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.2e-142 510.8 464 56.0
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.6e-142 509.6 464 55.2
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 3.4e-142 509.2 465 56.3
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 5.7e-142 508.4 464 56.0
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 5.7e-142 508.4 463 56.6
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 5.7e-142 508.4 463 56.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.1e-140 502.3 465 55.3
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.2e-139 500.7 464 55.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.7e-138 496.9 462 56.3
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 6.6e-138 495.0 465 53.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 8.6e-138 494.6 467 54.6
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 3.3e-137 492.7 466 54.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 5.6e-137 491.9 467 54.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-136 490.7 468 54.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-136 490.3 468 54.5
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.6e-136 489.2 468 54.3
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.7e-136 488.8 471 54.1
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 8.0e-136 488.0 470 54.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.8e-135 486.9 466 53.9
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.3e-135 486.5 468 53.6
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.6e-134 483.0 470 54.3
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 4.4e-134 482.3 463 54.0
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 7.5e-134 481.5 466 53.0
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.7e-133 480.3 463 53.8
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 4.1e-132 475.7 463 52.3
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.0e-132 474.9 466 50.9
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 4.6e-131 472.2 464 51.5
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.8e-128 463.0 458 51.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.6e-128 462.6 466 51.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.6e-128 462.6 443 54.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.2e-128 461.8 466 51.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 2.0e-126 456.8 424 52.8
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.6e-126 456.4 466 50.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.6e-118 429.9 440 53.6
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.8e-118 428.7 465 48.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.4e-117 424.9 437 49.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 6.6e-114 415.2 493 44.0
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.3e-113 412.5 451 48.3
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.8e-111 407.1 470 45.1
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 8.4e-109 398.3 492 43.1
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.3e-106 390.2 463 44.3
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 3.8e-101 372.9 465 44.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 4.8e-96 355.9 429 41.5
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 4.8e-96 355.9 296 59.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 9.9e-94 348.2 283 61.1
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 4.8e-88 329.3 370 47.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 4.8e-88 329.3 380 46.3
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 6.0e-83 312.4 466 37.1
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 3.4e-78 296.6 503 34.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 1.7e-77 294.3 472 38.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-72 278.1 528 35.4
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 4.7e-59 233.0 329 42.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 6.7e-58 229.2 538 31.4
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 3.3e-57 226.9 484 31.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.1e-47 195.3 192 53.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.9e-44 184.5 366 32.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.4e-41 173.7 117 70.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.7e-38 164.1 162 49.4
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.0e-37 162.2 162 48.8
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.2e-36 156.8 362 32.3
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 5.5e-36 156.4 128 56.2
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.0e-34 150.6 125 55.2
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.0e-34 150.6 125 55.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-33 148.7 124 54.8
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 3.1e-31 140.6 360 28.3
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 5.0e-29 133.3 454 24.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.6e-29 132.9 101 61.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 4.3e-28 130.2 215 37.2
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 9.5e-28 129.0 230 35.2
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 2.6e-25 120.9 301 29.9
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.2e-18 96.7 124 40.3
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.3e-16 92.0 168 33.9
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.3e-12 77.0 66 53.0
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.1e-10 72.4 67 49.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.1e-10 72.4 67 49.3
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.3e-10 71.2 73 49.3
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.5e-06 57.4 39 66.7
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 3.5e-06 57.4 38 68.4


User provided reference genes

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