Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 1.8e-105 386.0 201 100.0
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 8.2e-90 334.0 201 85.1
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 7.0e-89 330.9 186 91.9
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 4.5e-80 301.6 203 77.3
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 1.0e-76 290.4 201 75.1
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 2.8e-74 282.3 192 73.4
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 5.9e-72 274.6 202 69.3
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 1.7e-71 273.1 202 67.8
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 1.0e-68 263.8 208 65.9
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 5.0e-63 245.0 154 77.3
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 1.9e-62 243.0 199 59.3
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 2.0e-59 233.0 201 61.7
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 3.4e-59 232.3 201 59.7
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 7.5e-59 231.1 191 62.8
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 1.3e-58 230.3 196 60.2
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 1.7e-58 229.9 202 59.9
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 6.3e-58 228.0 193 60.1
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 6.3e-58 228.0 198 59.1
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 4.5e-56 221.9 198 60.6
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 1.7e-55 219.9 199 56.8
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 3.8e-55 218.8 203 58.6
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 6.6e-55 218.0 198 56.6
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 8.6e-55 217.6 199 55.3
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 8.6e-55 217.6 200 56.0
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 1.9e-54 216.5 200 55.0
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 3.3e-54 215.7 199 55.3
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 5.6e-54 214.9 200 54.5
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 1.2e-53 213.8 195 59.0
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 1.6e-53 213.4 162 65.4
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 6.1e-53 211.5 196 54.6
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 8.0e-53 211.1 202 55.9
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 1.8e-52 209.9 199 56.3
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 1.8e-52 209.9 194 52.6
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 1.8e-52 209.9 199 56.3
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 2.3e-52 209.5 176 60.2
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 2.3e-52 209.5 176 60.2
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 1.5e-51 206.8 194 56.2
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 2.6e-51 206.1 199 54.3
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 3.4e-51 205.7 199 54.3
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 4.4e-51 205.3 199 52.8
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 7.5e-51 204.5 165 62.4
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 9.8e-51 204.1 200 54.5
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 2.2e-50 203.0 156 68.6
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 2.9e-50 202.6 193 55.4
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 2.9e-50 202.6 199 54.3
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 4.9e-50 201.8 198 53.5
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 1.9e-49 199.9 198 51.5
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 1.2e-48 197.2 195 52.8
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 2.7e-48 196.1 192 53.6
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 3.5e-48 195.7 196 53.1
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 1.3e-47 193.7 199 48.7
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 1.3e-47 193.7 195 52.8
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 2.3e-47 193.0 198 52.5
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 3.9e-47 192.2 189 53.4
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 2.5e-46 189.5 165 58.2
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 3.3e-46 189.1 198 52.5
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 2.3e-44 183.0 176 51.7
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 2.3e-44 183.0 189 54.0
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 3.1e-44 182.6 200 49.5
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 8.9e-44 181.0 195 48.2
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 1.5e-43 180.3 195 48.7
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 1.3e-42 177.2 143 58.7
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 2.9e-42 176.0 138 63.8
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 6.4e-42 174.9 171 52.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.0e-41 171.4 199 46.2
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 3.0e-39 166.0 135 60.7
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 3.9e-39 165.6 198 48.5
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 3.3e-38 162.5 136 57.4
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 3.3e-38 162.5 175 46.9
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 5.2e-36 155.2 195 47.7
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 8.9e-36 154.5 141 56.0
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 1.1e-33 147.5 201 39.3
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 1.4e-33 147.1 117 60.7
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 2.1e-32 143.3 191 42.4
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 6.0e-32 141.7 201 42.8
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 7.8e-32 141.4 202 41.1
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 7.8e-32 141.4 207 43.5
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 1.0e-31 141.0 145 51.0
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 5.1e-31 138.7 139 48.9
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 1.5e-30 137.1 202 40.6
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 1.6e-29 133.7 205 40.0
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 1.6e-29 133.7 205 40.0
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 2.1e-29 133.3 207 39.6
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 2.8e-29 132.9 165 43.6
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 2.8e-29 132.9 207 39.6
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 2.8e-29 132.9 207 39.1
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 6.2e-29 131.7 207 39.1
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 8.1e-29 131.3 197 42.1
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 1.4e-28 130.6 212 36.3
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 2.4e-28 129.8 143 47.6
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 2.0e-27 126.7 209 37.3
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 3.4e-27 125.9 206 37.9
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 2.2e-26 123.2 181 39.2
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 3.9e-23 112.5 205 36.1
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 1.2e-21 107.5 121 47.9
Nitab4.5_0002613g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 1.6e-21 107.1 76 69.7
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 2.6e-19 99.8 214 30.8
Pp3c3_19950 Physcomitrium patens HOM05D007615 ORTHO05D009643 4.6e-16 89.0 150 34.0
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 2.3e-15 86.7 157 37.6
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 3.9e-15 85.9 142 40.8
Manes.10G016915 Manihot esculenta HOM05D007615 ORTHO05D009643 8.7e-15 84.7 120 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2678 Anthoceros agrestis HOM05D007615 ORTHO05D009643 1.1e-12 77.8 200 25.5
Lalb_Chr04g0250741 Lupinus albus HOM05D007615 ORTHO05D009643 1.9e-09 67.0 43 72.1


User provided reference genes

Program Settings