Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.0e-91 340.1 175 100.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.5e-91 337.4 175 99.4
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.5e-91 337.4 175 99.4
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.0e-75 284.6 166 89.2
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.4e-69 266.5 178 79.8
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.0e-60 236.1 175 73.1
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.5e-60 235.0 174 74.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 4.5e-60 235.0 174 74.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 4.5e-60 235.0 177 72.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.2e-58 228.4 172 72.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 9.4e-58 227.3 187 67.9
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.2e-57 226.9 193 68.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-57 226.9 184 67.9
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.6e-57 226.5 207 63.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.6e-57 226.5 175 69.7
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.1e-57 226.1 174 71.3
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.1e-57 226.1 174 69.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.7e-57 225.7 171 71.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.1e-57 224.6 169 71.0
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-56 223.8 175 68.0
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.8e-56 223.0 176 67.6
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.3e-56 222.6 173 70.5
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.3e-56 222.6 176 67.6
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 4.0e-56 221.9 184 65.2
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 4.0e-56 221.9 184 65.2
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.0e-56 221.9 173 68.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 6.8e-56 221.1 174 69.5
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.8e-56 220.7 175 68.0
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.4e-55 218.4 171 68.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.4e-55 218.4 167 70.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 5.7e-55 218.0 180 66.7
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 5.7e-55 218.0 175 70.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 9.8e-55 217.2 176 65.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 9.8e-55 217.2 189 65.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.8e-55 217.2 175 68.0
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.7e-54 216.5 169 72.2
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.8e-54 215.7 184 65.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.8e-54 215.7 168 67.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 3.7e-54 215.3 169 67.5
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.7e-54 215.3 176 69.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 8.3e-54 214.2 184 65.2
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 8.3e-54 214.2 188 64.4
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.1e-53 213.8 178 65.7
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.4e-53 212.6 175 65.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.0e-53 211.1 184 63.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 7.0e-53 211.1 181 62.4
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 7.0e-53 211.1 172 66.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-52 210.3 184 62.5
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.0e-52 209.5 193 60.6
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.0e-52 209.5 189 61.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 65.9
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.5e-52 208.8 177 65.0
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 4.5e-52 208.4 179 65.9
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 4.5e-52 208.4 177 64.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.9e-52 208.0 175 65.7
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 7.7e-52 207.6 169 65.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.0e-51 207.2 176 65.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-51 206.8 168 64.9
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.2e-51 206.1 178 62.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.2e-51 206.1 172 65.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 2.2e-51 206.1 175 65.7
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.9e-51 205.7 165 69.7
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.8e-51 205.3 176 66.5
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.0e-51 204.9 170 65.9
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.0e-51 204.9 132 78.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 6.5e-51 204.5 176 64.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.1e-50 203.8 176 64.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.5e-50 203.4 209 56.0
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.5e-50 203.4 167 65.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.5e-50 202.6 170 68.2
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.2e-50 202.2 171 66.7
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 7.2e-50 201.1 189 61.9
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 7.2e-50 201.1 180 63.9
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 7.2e-50 201.1 180 63.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 7.2e-50 201.1 180 63.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 9.4e-50 200.7 194 57.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 9.4e-50 200.7 174 62.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 9.4e-50 200.7 189 60.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-49 200.3 174 62.1
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.6e-49 199.9 176 63.6
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 2.1e-49 199.5 177 63.3
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.1e-49 199.5 204 58.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 3.6e-49 198.7 192 59.9
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.6e-49 198.7 176 61.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 6.1e-49 198.0 176 63.1
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 4.0e-48 195.3 177 63.8
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.0e-48 195.3 170 62.4
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 8.8e-48 194.1 189 59.3
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 8.8e-48 194.1 170 62.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 8.8e-48 194.1 183 60.1
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.2e-47 193.7 177 61.6
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 171 63.7
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.0e-47 193.0 179 62.0
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.6e-47 192.6 168 61.9
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.6e-47 192.6 153 67.3
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 5.7e-47 191.4 189 58.7
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.7e-47 191.4 171 63.2
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 7.5e-47 191.0 181 60.8
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.5e-47 191.0 171 64.3
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 9.8e-47 190.7 174 62.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 9.8e-47 190.7 174 62.1
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 2.2e-46 189.5 152 67.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.8e-46 189.1 171 63.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 6.3e-46 188.0 177 59.3
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-45 186.4 171 61.4
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.4e-45 186.0 133 72.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.1e-45 185.3 170 61.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.2e-44 183.7 168 59.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.7e-43 179.9 193 56.0
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.8e-43 178.7 120 72.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.2e-41 173.7 186 56.5
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.1e-41 172.9 155 61.3
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.4e-40 170.2 170 60.0
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 6.8e-40 167.9 133 65.4
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.9e-38 162.5 141 65.2
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.9e-38 161.8 138 65.2
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 6.4e-38 161.4 91 86.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.2e-37 159.1 172 58.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.7e-36 156.0 144 61.1
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 8.0e-33 144.4 102 69.6
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.8e-32 143.3 196 43.4
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.3e-32 142.9 131 60.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.5e-31 140.2 188 44.1
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 9.8e-31 137.5 120 59.2
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.4e-29 133.7 103 65.0
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.4e-29 132.9 90 76.7
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.2e-29 132.5 103 64.1
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.2e-28 130.6 104 62.5
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.6e-28 130.2 136 58.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.0e-28 129.8 101 62.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.3e-27 126.3 128 51.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.0e-27 125.9 103 65.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 8.6e-27 124.4 109 61.5
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 2.1e-25 119.8 122 54.9
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.3e-24 116.3 104 56.7
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.2e-23 114.0 174 42.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.7e-22 110.2 102 55.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.9e-22 109.4 105 57.1
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.4e-22 108.2 96 68.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.9e-21 106.7 111 54.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.2e-21 105.9 110 50.9
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 9.2e-21 104.4 98 53.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-19 100.5 80 60.0
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.3e-19 99.8 124 50.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.9e-19 99.0 82 59.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.4e-16 90.5 139 41.0
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.8e-16 90.1 98 44.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.1e-16 89.4 101 50.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.2e-16 88.6 64 73.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.6e-15 86.3 85 52.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.6e-15 86.3 67 68.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.4e-13 79.7 118 36.4


User provided reference genes

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