Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 5.6e-107 391.0 200 100.0
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 4.8e-98 361.3 200 90.5
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 3.0e-92 342.0 199 86.4
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 1.1e-73 280.4 207 70.5
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 2.9e-71 272.3 217 65.0
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.5e-67 260.0 203 68.0
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.7e-66 256.5 197 64.5
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 4.1e-65 251.9 195 66.7
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.6e-64 250.0 216 63.0
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.4e-60 236.9 199 61.8
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 2.3e-60 236.1 199 60.8
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 4.0e-60 235.3 207 58.5
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 5.7e-59 231.5 200 63.5
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.7e-58 229.9 203 60.6
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.2e-58 229.6 189 64.0
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.6e-56 223.4 203 56.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 2.0e-56 223.0 205 58.5
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 5.9e-56 221.5 203 56.7
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.9e-56 221.5 198 58.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.0e-55 220.7 204 56.4
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.0e-55 220.7 204 56.4
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.0e-55 220.7 198 57.6
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.7e-55 219.9 203 57.1
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.5e-55 218.0 203 56.2
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 6.5e-55 218.0 194 59.3
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 8.5e-55 217.6 122 87.7
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.5e-54 216.9 203 55.7
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.9e-54 216.5 179 60.3
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 5.5e-54 214.9 164 67.7
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 9.4e-54 214.2 185 58.4
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.6e-53 213.4 161 68.9
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 2.1e-53 213.0 185 59.5
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.7e-53 212.6 195 55.9
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 3.6e-53 212.2 161 67.7
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.0e-52 209.1 197 59.4
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 4.0e-52 208.8 190 57.4
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 5.2e-52 208.4 199 54.8
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 5.2e-52 208.4 196 56.6
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 5.2e-52 208.4 203 54.7
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 6.8e-52 208.0 195 56.4
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.0e-51 206.5 199 53.8
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.6e-51 206.1 195 56.4
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 5.7e-51 204.9 205 54.1
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 5.7e-51 204.9 195 56.4
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 5.7e-51 204.9 199 54.8
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 7.5e-51 204.5 165 65.5
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 9.8e-51 204.1 193 56.0
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 2.2e-50 203.0 199 54.8
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.8e-50 202.6 198 56.1
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 3.7e-50 202.2 196 55.6
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 3.7e-50 202.2 196 55.1
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 4.8e-50 201.8 204 57.4
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 6.3e-50 201.4 195 55.4
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 6.3e-50 201.4 202 54.0
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 8.3e-50 201.1 157 66.9
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.8e-49 199.9 194 56.2
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.6e-48 196.8 196 54.1
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 2.0e-48 196.4 195 56.9
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 3.5e-48 195.7 191 50.3
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.9e-48 194.9 177 55.9
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.0e-47 194.1 167 55.7
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 2.3e-47 193.0 184 56.0
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.9e-47 192.6 192 54.2
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 6.5e-47 191.4 210 50.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 5.5e-46 188.3 187 52.9
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 1.2e-45 187.2 181 54.7
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 4.7e-45 185.3 175 55.4
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 6.1e-45 184.9 175 56.6
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.4e-44 183.7 196 52.0
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.3e-44 183.0 175 56.0
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 3.0e-44 182.6 198 53.0
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 6.8e-44 181.4 174 54.0
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 6.8e-44 181.4 137 62.8
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 6.8e-44 181.4 156 58.3
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 2.0e-43 179.9 187 52.9
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.6e-43 179.5 156 59.0
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.7e-42 176.8 175 53.1
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 2.8e-42 176.0 163 55.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 3.7e-42 175.6 186 51.6
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 3.1e-41 172.6 177 50.8
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 3.1e-41 172.6 139 58.3
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 5.4e-41 171.8 139 57.6
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 5.4e-41 171.8 139 57.6
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 5.4e-41 171.8 139 57.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 5.4e-41 171.8 139 57.6
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 5.4e-41 171.8 159 57.2
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 5.9e-40 168.3 157 54.1
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.9e-39 166.0 189 46.6
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.5e-38 163.7 191 49.2
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 5.6e-38 161.8 146 55.5
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 1.6e-37 160.2 136 56.6
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-36 157.5 192 42.2
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.1e-33 147.5 125 60.0
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.6e-32 143.7 125 60.0
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.0e-32 143.3 125 59.2
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 6.6e-31 138.3 98 70.4
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.5e-30 137.1 161 47.8
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 3.3e-30 136.0 120 60.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 9.5e-30 134.4 118 59.3
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-29 134.0 103 68.9
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.1e-28 131.0 131 55.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 3.1e-28 129.4 102 66.7
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.6e-27 126.3 181 39.2
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 3.4e-27 125.9 112 56.2
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 5.8e-27 125.2 95 68.4
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.7e-26 122.5 184 40.2
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 1.9e-25 120.2 141 44.7
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.2e-24 117.5 205 36.6
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.3e-23 114.0 93 53.8
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 5.0e-23 112.1 93 66.7
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.1e-22 110.9 86 65.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 4.3e-22 109.0 88 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 2.1e-21 106.7 119 44.5
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 2.1e-21 106.7 118 49.2
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 2.3e-20 103.2 110 48.2
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.9e-20 101.3 125 41.6
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 8.9e-20 101.3 125 41.6
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 5.4e-17 92.0 109 45.9
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 5.4e-17 92.0 106 43.4
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-13 80.1 69 56.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 2.8e-13 79.7 64 60.9
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-13 79.3 108 44.4
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 6.2e-13 78.6 69 55.1
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-11 73.6 64 57.8
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 4.4e-11 72.4 63 60.3
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 1.3e-10 70.9 68 58.8
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.1e-09 67.8 83 43.4
SHI10091 Sapria himalayana HOM05D000172 ORTHO05D008216 5.4e-09 65.5 73 42.5
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 4.6e-08 62.4 55 63.6


User provided reference genes

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