Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.2e-55 219.5 105 100.0
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 6.5e-38 160.6 79 94.9
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 5.5e-37 157.5 79 92.4
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 5.5e-37 157.5 79 91.1
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.6e-36 156.0 79 91.1
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.6e-36 156.0 79 92.4
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 2.7e-36 155.2 79 88.6
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 7.9e-36 153.7 79 88.6
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.0e-35 153.3 79 91.1
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.0e-35 153.3 79 87.3
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 1.0e-35 153.3 79 86.1
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.4e-35 152.9 79 87.3
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 2.3e-35 152.1 79 89.9
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.3e-35 152.1 79 88.6
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 2.3e-35 152.1 79 86.1
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 6.7e-35 150.6 79 84.8
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 6.7e-35 150.6 79 86.1
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 88.6
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 86.1
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 84.8
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 87.3
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 87.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 86.1
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 8.8e-35 150.2 79 84.8
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.1e-34 149.8 79 86.1
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 1.1e-34 149.8 79 86.1
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.1e-34 149.8 79 86.1
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.0e-34 149.1 79 86.1
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 2.6e-34 148.7 79 84.8
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 2.6e-34 148.7 79 83.5
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.6e-34 148.7 79 84.8
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 4.4e-34 147.9 79 84.8
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 5.7e-34 147.5 79 83.5
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 5.7e-34 147.5 79 87.3
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 5.7e-34 147.5 79 83.5
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 5.7e-34 147.5 79 84.8
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 9.7e-34 146.7 79 83.5
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 9.7e-34 146.7 79 83.5
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 1.3e-33 146.4 79 82.3
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.3e-33 146.4 79 81.0
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.3e-33 146.4 79 83.5
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.7e-33 146.0 79 83.5
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 1.7e-33 146.0 79 83.5
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.7e-33 146.0 79 82.3
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.7e-33 146.0 79 82.3
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 83.5
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 82.3
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 82.3
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 81.0
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 82.3
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 2.2e-33 145.6 79 82.3
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 2.8e-33 145.2 79 81.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 3.7e-33 144.8 79 82.3
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 3.7e-33 144.8 79 82.3
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.7e-33 144.8 79 83.5
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.7e-33 144.8 78 83.3
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 3.7e-33 144.8 79 87.3
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.8e-33 144.4 79 82.3
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 4.8e-33 144.4 78 84.6
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 8.2e-33 143.7 79 81.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.1e-32 143.3 79 82.3
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 1.1e-32 143.3 78 82.1
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.4e-32 142.9 79 79.7
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.4e-32 142.9 77 87.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.8e-32 142.5 79 83.5
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 2.4e-32 142.1 79 83.5
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 5.3e-32 141.0 79 82.3
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 7.0e-32 140.6 79 78.5
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.2e-31 139.8 79 81.0
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 1.6e-31 139.4 79 77.2
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 4.5e-31 137.9 79 77.2
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.0e-30 136.7 79 77.2
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.3e-30 136.3 84 79.8
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.7e-30 136.0 80 73.8
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.7e-30 136.0 94 70.2
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 2.9e-30 135.2 79 81.0
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 3.8e-30 134.8 79 75.9
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.0e-30 134.4 94 69.1
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.0e-30 134.4 94 69.1
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 5.5e-29 131.0 79 74.7
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 7.2e-29 130.6 110 60.9
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 9.4e-29 130.2 74 75.7
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.2e-28 129.8 74 75.7
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.6e-28 129.4 79 72.2
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.6e-28 129.4 79 72.2
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 1.6e-28 129.4 79 72.2
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 3.6e-28 128.3 106 59.4
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 8.0e-28 127.1 67 85.1
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.0e-27 126.7 79 70.9
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 1.8e-27 125.9 75 73.3
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 5.2e-27 124.4 77 74.0
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.1e-26 123.2 65 83.1
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-25 119.8 64 79.7
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.2e-25 119.0 64 78.1
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.7e-25 118.2 64 78.1
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 6.3e-25 117.5 99 59.6
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 8.2e-25 117.1 64 78.1
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.1e-24 116.7 87 62.1
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.8e-24 115.9 64 79.7
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 2.4e-24 115.5 66 80.3
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.1e-24 115.2 64 76.6
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 9.1e-24 113.6 64 71.9
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 2.7e-23 112.1 65 76.9
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 3.5e-23 111.7 65 78.5
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 1.0e-22 110.2 75 66.7
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.9e-22 108.6 78 60.3
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 3.8e-22 108.2 63 76.2
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 6.5e-22 107.5 63 77.8
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.0e-18 95.9 50 86.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 2.6e-18 95.5 78 59.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.1e-16 90.1 106 47.2
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.1e-16 90.1 106 47.2
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.1e-16 88.6 65 60.0
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 3.5e-15 85.1 75 49.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.9e-13 79.3 42 88.1
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.2e-13 78.6 40 87.5
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 7.2e-13 77.4 53 69.8
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 3.7e-09 65.1 32 81.2
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.4e-08 62.4 36 80.6
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 4.1e-08 61.6 37 67.6
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 1.3e-06 56.6 65 47.7
VMungo1080G0538 Vigna mungo HOM05D006200 ORTHO05D007569 3.8e-06 55.1 25 96.0


User provided reference genes

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